View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_8 (Length: 421)
Name: NF17947_high_8
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 42305641 - 42305239
Alignment:
| Q |
1 |
tggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagcttnnnnnnncattccttctaatttatatataa |
100 |
Q |
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| T |
42305641 |
tggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagctcaaaaaaacattccttctaatttatatataa |
42305542 |
T |
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| Q |
101 |
ttaatttggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttaccaactaatgctgtt |
200 |
Q |
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| T |
42305541 |
ttaatatggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttaccgactaatgctgct |
42305442 |
T |
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| Q |
201 |
tctatcacatccacatgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaattttaattcccagattgtaatctttat |
300 |
Q |
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| T |
42305441 |
tctaccacatcgacatgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaattttaattcccagattgtaatctttat |
42305342 |
T |
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| Q |
301 |
aaaatgaaggaggctaaattggttgaatctccgtcttagtatggcatagtcaagagaagtgctttccgacacataattgctagaggtgattgagttggca |
400 |
Q |
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| T |
42305341 |
aaaatgaaggaggctaaattggttgattctccgtcttaatacggcatagtcaagagaagtgcttttcgacacataattgctggaggtgattgagttggca |
42305242 |
T |
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| Q |
401 |
att |
403 |
Q |
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| T |
42305241 |
att |
42305239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 32356527 - 32356468
Alignment:
| Q |
214 |
catgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaa |
273 |
Q |
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| T |
32356527 |
catgttcatagttttttgtttattttattgaaggatttcaacaaagttgtggtcttgcaa |
32356468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 33581259 - 33581175
Alignment:
| Q |
168 |
cattgaatgcaaatcttaccaactaatgctgtttctatcacatccacatgttcatagttttttgttaattttgttgaaggatttcaacgaa |
258 |
Q |
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| T |
33581259 |
cattgcatgcaaatcttactagctaatgctgcttcta------ctacatattcttagttttttgtttattttgttgaaggatttcaacgaa |
33581175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 42304443 - 42304500
Alignment:
| Q |
347 |
tagtcaagagaagtgctttccgacacataat-tgctagaggtgattgagttggcaatt |
403 |
Q |
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| T |
42304443 |
tagtcaagagaagtgcttttcgatacataatctgctggaggtgactgagttggcaatt |
42304500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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