View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_high_9 (Length: 357)
Name: NF17947_high_9
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 34592483 - 34592806
Alignment:
| Q |
19 |
atttattctagtacatcttattgaaaattaatatgattgaacaataatttcagctcttccacttgaaactagctcgtgggtgtcaagacatacatcttac |
118 |
Q |
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| T |
34592483 |
atttattctagcacatcttattgaaaattaatatgattgaacaataacttcagctcttccacttgaaactagctcgtgggtgtcaagacatacatcttac |
34592582 |
T |
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| Q |
119 |
aagcatgagaatctatttcagcggagatttcttttgaaacaaacgattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaat |
218 |
Q |
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| T |
34592583 |
aagcatgagaatctatttcagcggagatttcttttgaaacaaacaattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaat |
34592682 |
T |
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| Q |
219 |
atgatctaaagaacaatataaggtcaattttgtagctatattacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgacc |
318 |
Q |
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| T |
34592683 |
atgatctaaaaaacaatataaggtcaattttgtaggtatattacctcccataaatctcttgcatcaacaatggcttctggttctaggcctatttcagacc |
34592782 |
T |
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| Q |
319 |
aagatgcagttaccgttgcctttg |
342 |
Q |
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| T |
34592783 |
aggatgcaattaccgttgcatttg |
34592806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 34577227 - 34577310
Alignment:
| Q |
259 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
342 |
Q |
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| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttg |
34577310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 32599926 - 32600009
Alignment:
| Q |
259 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
342 |
Q |
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| T |
32599926 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttg |
32600009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 32589478 - 32589561
Alignment:
| Q |
259 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
342 |
Q |
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| T |
32589478 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgcatttg |
32589561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 32589314 - 32589350
Alignment:
| Q |
97 |
ggtgtcaagacatacatcttacaagcatgagaatcta |
133 |
Q |
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| T |
32589314 |
ggtgtcaaaacatacatcttacaagcatgtgaatcta |
32589350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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