View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_13 (Length: 329)
Name: NF17947_low_13
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 51114710 - 51115015
Alignment:
| Q |
8 |
cataggccagaagaagatataatcagcaattagaaaggatattgaaccaacaaatttaatcccaaatgaagaaggaaggggtaaatgaattagtctcttc |
107 |
Q |
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| T |
51114710 |
cataggccagaagaagatataatcagcaattagaaaggatattgaaccaacaaatttaatcccaaatgaagaaggaaggggtaaatgaattagtctcttc |
51114809 |
T |
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| Q |
108 |
agacaaactacaccaataaccaacattgctgaagtttcaaaaacaagaagagcaaagaaatctcgtttgttcttttttccaatgcaattggatacaatag |
207 |
Q |
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| T |
51114810 |
agacaaactacaccaataaccaacattgctgaagtttctaaaacaagaagagcaaagaaatctcgtttgttcttttttccaatgcaattggatacaatag |
51114909 |
T |
|
| Q |
208 |
gacaatgatggtcaaattgttcaacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggacca |
307 |
Q |
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| T |
51114910 |
gacaatgatggtcaaattgttcaacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctaacaatcttgcatgttgaacaaagttgggacca |
51115009 |
T |
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| Q |
308 |
atttcc |
313 |
Q |
| |
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|||||| |
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| T |
51115010 |
atttcc |
51115015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 51105155 - 51105463
Alignment:
| Q |
11 |
aggccagaagaagatataatcagcaattagaaaggatattgaaccaacaaatttaatcc------caaatgaagaaggaaggggtaaatgaattagtctc |
104 |
Q |
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| T |
51105155 |
aggccagaagaggaaattatcagcaattagaaagaatattgaaccaacaattttaatccatgatccaaatgaagaaggacggcgagaatgagcaagtctc |
51105254 |
T |
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| Q |
105 |
ttcagacaaactacaccaataaccaacattgctgaagtttcaaaaacaagaagagcaaagaaatctcgtttgttcttttttccaatgcaattggatacaa |
204 |
Q |
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| T |
51105255 |
ttgagacaaactacaccagtaaccaacattgctgaagtttctaaaacaagaaaagcaaagaaatctcgtttgtttttcttgccaatgcaactagacaacc |
51105354 |
T |
|
| Q |
205 |
taggacaatgatggtcaaattgttcaacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttggga |
304 |
Q |
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| T |
51105355 |
aaggacaatgatggtcaaattgttccacacattgatcacatatagcacaatgtttcgtacgaagaggcctgataatcttgcgtgttgcacaaatttggga |
51105454 |
T |
|
| Q |
305 |
ccaatttcc |
313 |
Q |
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||||||||| |
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| T |
51105455 |
ccaatttcc |
51105463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 48038613 - 48038517
Alignment:
| Q |
186 |
ccaatgcaattggatacaataggacaatgatggtcaaattgttcaacacaacgatcacatgtagaacaatgtttcgcacgaagaggcctgacaatct |
282 |
Q |
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||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
48038613 |
ccaatgcaattggatacccaaggacaatgatggtcaaattgctccacacaacgatcacatgtagaacaatgttttgcacgaagaggtctgacaatct |
48038517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 48038384 - 48038347
Alignment:
| Q |
276 |
acaatcttgcatgttgaacaaagttgggaccaatttcc |
313 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||| |
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| T |
48038384 |
acaaccttgcatgttgcacaaagttgggaccaatttcc |
48038347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 48039397 - 48039336
Alignment:
| Q |
108 |
agacaaactacaccaataaccaacattgctgaagtttcaaaaacaagaagagcaaagaaatc |
169 |
Q |
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||||| ||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||||| |
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| T |
48039397 |
agacatactccaccagtaaccaacattgctgaaacttcaagaataagaaaagcaaagaaatc |
48039336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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