View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_17 (Length: 288)
Name: NF17947_low_17
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 13870444 - 13870713
Alignment:
| Q |
14 |
aaatacaatggactaattacagaactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaa---------tctagaaaactnnnnnnnnn- |
103 |
Q |
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| T |
13870444 |
aaatataatgaactaattacataactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaaagcaacatctctagaaaactaaaaaaaaaa |
13870543 |
T |
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| Q |
104 |
-tacaagtactagttaaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattat |
202 |
Q |
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| T |
13870544 |
atacaagtactagttaaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattat |
13870643 |
T |
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| Q |
203 |
ggtctttgcaactactatcatggtgaggatgttgacgcttttgcgatggtggactcacacaactagaagc |
272 |
Q |
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| T |
13870644 |
ggtctttgcaactactatcatggtgaggatgttgacgcttttgcgatggtggactcgcacaactagaagc |
13870713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 14010569 - 14010838
Alignment:
| Q |
14 |
aaatacaatggactaattacagaactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaa---------tctagaaaactnnnnnnnnn- |
103 |
Q |
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||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14010569 |
aaatataatgaactaattacataactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaaagcaacatctctagaaaactaaaaaaaaaa |
14010668 |
T |
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| Q |
104 |
-tacaagtactagttaaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattat |
202 |
Q |
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| T |
14010669 |
atacaagtactagttaaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattat |
14010768 |
T |
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| Q |
203 |
ggtctttgcaactactatcatggtgaggatgttgacgcttttgcgatggtggactcacacaactagaagc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14010769 |
ggtctttgcaactactatcatggtgaggatgttgacgcttttgcgatggtggactcgcacaactagaagc |
14010838 |
T |
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