View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_22 (Length: 243)
Name: NF17947_low_22
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_22 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 22389 - 22616
Alignment:
| Q |
6 |
agcagcagagacaaaaattcaaagtcatgtacaagaggaagctatatcctcatggaaagtttgggaacctcctgatccaacaaggaggtccatgaaaacc |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22389 |
agcatcagagacaaaaattcaaagtcatgtacaagaggaagctatatcctcatggaaagtttgggaacctcctgatcgaacaaggaggtccatgaaaacc |
22488 |
T |
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| Q |
106 |
aggtgataaatagaggatgtttatttac-cnnnnnnnnnaggatttcttgctatgaaactatgtgattggtctaggtcaaactatttacattttatatag |
204 |
Q |
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|||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22489 |
aggtgaaaaatagaggatgttt-tttactttttttttttaggatttcttgctatgaaactatgtgattggtctaggtccaactatttacattttatatag |
22587 |
T |
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| Q |
205 |
ggattttatttaccatcactatgatgatg |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22588 |
ggattttatttaccatcactatgatgatg |
22616 |
T |
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