View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_23 (Length: 243)
Name: NF17947_low_23
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48701792 - 48701567
Alignment:
| Q |
1 |
ctttgtcaaacactagatttaatggtcttagtggtgatttcaatcttgttggtgggaagttacaagcatcaatatatgaactaattaatgtggttggtga |
100 |
Q |
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| T |
48701792 |
ctttgtcaaacactagatttaatggtcttagtggtgatttcaatcttcttggtgggaagttacaagcatcaatatatgaaataattaatgtgattggtga |
48701693 |
T |
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| Q |
101 |
tggtgaaaagagagttggattttggacaccagataaagggttgtctagaaatttggatacagaaggcctaataggcaataatagcattatgtattcttgt |
200 |
Q |
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| T |
48701692 |
tggtgaaaagagagttggattttggacaccagataaagggttgtctagaaatttggatacagaaggcctaataggcaataataacattatgtattcttgt |
48701593 |
T |
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| Q |
201 |
tctaaaaatgttcttgggtcaatcat |
226 |
Q |
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| T |
48701592 |
tcgaaaaatgttcttgggtcaatcat |
48701567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48713898 - 48713672
Alignment:
| Q |
1 |
ctttgtcaaacactagatttaatggtcttagtggtgatttcaatcttgttggtgggaagttacaagcatcaatatatgaactaattaatgtggttggtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
48713898 |
ctttgtcaaacactagatttaatggtcttagtggtgatttcaatgttgttggtgggaagttacaagcatcaatatatgaaataattaatgtgattggtga |
48713799 |
T |
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| Q |
101 |
tggtgaaaagagagttggattttggacaccagataaagggttgtctagaaatttggatacagaaggcctaat---aggcaataatagcattatgtattct |
197 |
Q |
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| T |
48713798 |
tggtgaaaagagagttggattttggacaccagataaagggttgtctagaaatttggatacagaaggcctaataagaagcaataatagc---atatattct |
48713702 |
T |
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| Q |
198 |
tgttctaaaaatgttcttgggtcaatcatg |
227 |
Q |
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| T |
48713701 |
acttctaaaaatgatcttggattaatcatg |
48713672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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