View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_low_28 (Length: 236)
Name: NF17947_low_28
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_28 |
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| [»] scaffold1127 (1 HSPs) |
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| [»] scaffold0597 (1 HSPs) |
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| [»] scaffold0996 (1 HSPs) |
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| [»] scaffold1024 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold1127 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold1127
Description:
Target: scaffold1127; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 2688 - 2468
Alignment:
| Q |
4 |
ctgacgggggtaaagccatccacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacatta |
103 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2688 |
ctgacgggggtaaagccatctacaaaatgtgacatcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacatta |
2589 |
T |
|
| Q |
104 |
aaagagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttgg |
203 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2588 |
aaatagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtctcttgg |
2489 |
T |
|
| Q |
204 |
acgttgcattatcaataatga |
224 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2488 |
acgttgcattatcaataatga |
2468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 22458858 - 22458638
Alignment:
| Q |
4 |
ctgacgggggtaaagccatccacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacatta |
103 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22458858 |
ctgacgggggtaaagccatctacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacatta |
22458759 |
T |
|
| Q |
104 |
aaagagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttgg |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22458758 |
aaagagtatccttccctttcaaccgtaatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtctcttgg |
22458659 |
T |
|
| Q |
204 |
acgttgcattatcaataatga |
224 |
Q |
| |
|
| ||||||||||||||||||| |
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| T |
22458658 |
atgttgcattatcaataatga |
22458638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 16221367 - 16221300
Alignment:
| Q |
38 |
tcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaa |
105 |
Q |
| |
|
||||| ||||| |||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
16221367 |
tcatgcccaattatttgacagtgagtacaaaagtccgggagccactcataggccacctctacattaaa |
16221300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 16006650 - 16006717
Alignment:
| Q |
113 |
ccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagc |
180 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | |||||||| ||||||||||| || || |||||||| |
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| T |
16006650 |
ccttccctttcaaccacaatttcatgaaaaagtttgcgagataaatccatatccaccaaaatgcgagc |
16006717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 22127175 - 22126955
Alignment:
| Q |
4 |
ctgacgggggtaaagccatccacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacatta |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22127175 |
ctgacgggggtaaagccatctacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacatta |
22127076 |
T |
|
| Q |
104 |
aaagagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttgg |
203 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
22127075 |
aaagagtatctttccctttcaaccgtaatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcataatgtccgtaaagtctcttgg |
22126976 |
T |
|
| Q |
204 |
acgttgcattatcaataatga |
224 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
22126975 |
acgttgcactatcaataatga |
22126955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 38232667 - 38232625
Alignment:
| Q |
113 |
ccttccctttcaaccataatttcataaaacatcttgcgagaaa |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
38232667 |
ccttccctttccaccataatttcataaaagatattgcgagaaa |
38232625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 15497600 - 15497384
Alignment:
| Q |
8 |
cgggggtaaagccatccacaaaatgtgacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaaag |
107 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
15497600 |
cgggagtaaagccatctacaaactgtgacatcatggccaatgttttggcagtgtgaacaaaattcagggagccactcataggccacctctacattaaaag |
15497501 |
T |
|
| Q |
108 |
agtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttggacgt |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
15497500 |
agtatccttccctttcaaccgtaatttcataaaacatcttgcgagaaaaatccatatcaactaagatgcgagcatagtttccataaagtctcttggacgt |
15497401 |
T |
|
| Q |
208 |
tgcattatcaataatga |
224 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15497400 |
tgcattatcaataatga |
15497384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 32136215 - 32136378
Alignment:
| Q |
59 |
tgtgaacaaaagtcagggagccactcataggctacctctacattaaaagagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaat |
158 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| || ||||||| ||||||||||||||| || | ||||||| ||||| || || | ||||| |
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|
| T |
32136215 |
tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccactgtgatttcatggaacattttacgtgcaaaat |
32136314 |
T |
|
| Q |
159 |
ccatatcgactaagatgcgagcatagtgtccataaagtgtcttggacgttgcattatcaataat |
222 |
Q |
| |
|
|||| || |||||||||||||| || || ||||| || |||||| ||| ||||| |||||||| |
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|
| T |
32136315 |
ccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataat |
32136378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 7979 - 8144
Alignment:
| Q |
52 |
ttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaaagagtatccttccctttcaaccataatttcataaaacatcttgcga |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7979 |
ttggcagtgtgaacaaaagtcaaggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttcataaaacatcttgcga |
8078 |
T |
|
| Q |
152 |
gaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttggacgttgcattatca |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8079 |
gaaaaatccgtatcgactaagatgcgagcatagtgtccataaagtctcttggacgttgcattatca |
8144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 2700 - 2510
Alignment:
| Q |
34 |
gacgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaaagagtatccttccctttcaaccataatt |
133 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| ||| ||||| |
|
|
| T |
2700 |
gacgtcatggccaatgttttggcagtgcgaacaaaaggcagggagccactcgtaggccacctccacattaaaagaataaccttctctttccaccgtaatt |
2601 |
T |
|
| Q |
134 |
tcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttggacgttgcattatcaataatga |
224 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||| |
|
|
| T |
2600 |
tcatgaaacatctggcgagagaaatccatatcaactaagatgcgagcatagtgtccgtaaagtctcttggtcgttgcactatcaataatga |
2510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1024 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1024
Description:
Target: scaffold1024; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 984 - 830
Alignment:
| Q |
38 |
tcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaaagagtatccttccctttcaaccataa--tttc |
135 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| || ||||||||||| || | ||||| | |||||| | |||||||||||| ||||| | | |||| |
|
|
| T |
984 |
tcatgaccaatgttttggcagtgtgtacaaaaatccgggagccactcgtatacgacctcaatattaaatgcgtatccttccctctcaacagtgatttttc |
885 |
T |
|
| Q |
136 |
ataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtcca |
190 |
Q |
| |
|
|| ||| | || || |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
884 |
atgaaataatttccgtgaaaaatccatatccactaaaatgcgagcatagtgtcca |
830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 203520 - 203587
Alignment:
| Q |
113 |
ccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagc |
180 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | |||||||| ||||||||||| || || |||||||| |
|
|
| T |
203520 |
ccttccctttcaaccacaatttcatgaaaaagtttgcgagataaatccatatccaccaaaatgcgagc |
203587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 9692 - 9789
Alignment:
| Q |
122 |
tcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtgtcttggacgttgcattatcaat |
219 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||| |||||||||| || || || ||||||||||| ||||| ||| ||||||| ||||| |||||||| |
|
|
| T |
9692 |
tcaaccagaatttcataatacaacttcttagagcaatccatatccaccaatattcgagcatagtgaccatagagtctcttggatgttgcgttatcaat |
9789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 23015999 - 23015934
Alignment:
| Q |
125 |
accataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtcca |
190 |
Q |
| |
|
||||||||||||| ||||| | | ||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
23015999 |
accataatttcatcgaacatatggtgagaaaaatatatatcgactaagatacgagcataatgtcca |
23015934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 17073436 - 17073560
Alignment:
| Q |
38 |
tcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggctacctctacattaaaagagtatccttccctttcaaccataatttcat |
137 |
Q |
| |
|
||||||| ||| |||| || |||| |||||| || || |||||||||||||| ||||| |||||||| | || |||||||| |||||| | || |||| |
|
|
| T |
17073436 |
tcatggcttatggtttgacaatgtgtacaaaattccggaagccactcataggccacctccacattaaacgcataaccttccctctcaaccgtgatctcat |
17073535 |
T |
|
| Q |
138 |
aaaacatcttgcgagaaaaatccat |
162 |
Q |
| |
|
||| | ||||| ||||||||||| |
|
|
| T |
17073536 |
gaaagagtttgcgtgaaaaatccat |
17073560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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