View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_3 (Length: 538)
Name: NF17947_low_3
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 520
Target Start/End: Original strand, 30242268 - 30242775
Alignment:
| Q |
13 |
tggacatcatcgaaaacgacactccaatatgagagtaaaacaagacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaa |
112 |
Q |
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| T |
30242268 |
tggacatcatcgaaaacgacactccaatatgagagtaaaacaagacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaa |
30242367 |
T |
|
| Q |
113 |
ctttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30242368 |
ctttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaa |
30242467 |
T |
|
| Q |
213 |
acaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaatagtatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30242468 |
acaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaataatatc |
30242567 |
T |
|
| Q |
313 |
cattcaaaaacaagtctccactttactttaaannnnnnnnnnnngttgcgtgacttcgaatcacgcaaaacctcttcatcctcatcctctgattcttctt |
412 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30242568 |
cattcaaaaacaagtctccactttactttaaattttttctttttgttgtgtgacttcgaatcacgcaaaacctcttcgtcctcatcctctgattcttctt |
30242667 |
T |
|
| Q |
413 |
cctggtattcatagtcgctgtcatcttcgacatcggaagagatcttgtatataggtaattgagtgtcttcttcttcagaggtaggtagtttgttgcgagg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30242668 |
cctggtattcatagtcgctgtcatcttcgacatcggaagagatcttgtatataggtaattgagtgtcttcttcttcagaggtaggtagtttgttgcgagg |
30242767 |
T |
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| Q |
513 |
tggatggt |
520 |
Q |
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|||||||| |
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| T |
30242768 |
tggatggt |
30242775 |
T |
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