View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_31 (Length: 204)
Name: NF17947_low_31
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 40093301 - 40093190
Alignment:
| Q |
20 |
tatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagt |
119 |
Q |
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| T |
40093301 |
tatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagt |
40093202 |
T |
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| Q |
120 |
ccaactgttaaa |
131 |
Q |
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| T |
40093201 |
ccaactgttaaa |
40093190 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 40062633 - 40062535
Alignment:
| Q |
31 |
ttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgtta |
129 |
Q |
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| T |
40062633 |
ttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaactacaaacacgaaaatctgaacctgaagtccaactgtta |
40062535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 40080912 - 40080857
Alignment:
| Q |
76 |
atgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaa |
131 |
Q |
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| T |
40080912 |
atgcatatttagaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaa |
40080857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 40080982 - 40080933
Alignment:
| Q |
31 |
ttagatatagtaatgagagaaatcattgggggagcaagcaattctatgca |
80 |
Q |
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||||||||||||||||||||||||| || ||||||||| | |||||||| |
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| T |
40080982 |
ttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 5051938 - 5052006
Alignment:
| Q |
120 |
ccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgaggagaagattgag |
188 |
Q |
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| T |
5051938 |
ccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgaggagaagattgag |
5052006 |
T |
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