View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_low_4 (Length: 527)
Name: NF17947_low_4
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45271113 - 45270801
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45271113 |
caaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccct |
45271014 |
T |
|
| Q |
111 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
210 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||||||||| | |||||||| |||| ||||| |||||||||||||||| ||||||||||||| |
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|
| T |
45271013 |
gcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaacacacagaacactgccaccttttgtacgtaattcagtta-tatcgatcaaagc |
45270915 |
T |
|
| Q |
211 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
45270914 |
--ttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacatt |
45270817 |
T |
|
| Q |
311 |
aactcacattgaaaag |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45270816 |
aactcacattgaaaag |
45270801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 340 - 511
Target Start/End: Complemental strand, 45293881 - 45293710
Alignment:
| Q |
340 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293881 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagcc |
45293782 |
T |
|
| Q |
440 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293781 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
45293710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 340 - 511
Target Start/End: Complemental strand, 45302841 - 45302670
Alignment:
| Q |
340 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45302841 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagcc |
45302742 |
T |
|
| Q |
440 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302741 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
45302670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45282887 - 45282574
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282887 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
45282788 |
T |
|
| Q |
111 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
210 |
Q |
| |
|
|||| ||||||||||||||||| |||| | || ||| ||| | | | | ||| |||| ||||| ||||||| |||| |||||||||| | |
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|
| T |
45282787 |
gcaaggaccattgtcactggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccaccttcggtacttaattcaattatcatcgatcaaaac |
45282688 |
T |
|
| Q |
211 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacatt |
310 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| |||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
45282687 |
ttttttattttatttaattaattattta-cttatgaatgaagaaagagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaaca-t |
45282590 |
T |
|
| Q |
311 |
aactcacattgaaaag |
326 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
45282589 |
aactaacattgaaaag |
45282574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 345 - 511
Target Start/End: Complemental strand, 45282536 - 45282370
Alignment:
| Q |
345 |
tgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
444 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282536 |
tgtgatcgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
45282437 |
T |
|
| Q |
445 |
tgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
511 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282436 |
tgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
45282370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45274646 - 45274331
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274646 |
caaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccct |
45274547 |
T |
|
| Q |
111 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
210 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||||||||||| | | | | ||| |||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
45274546 |
gcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattcaattattatctatcaaagc |
45274447 |
T |
|
| Q |
211 |
-ttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacat |
309 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| |||||| |||||| || |||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
45274446 |
tttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaatttatttttgaagaaaaca- |
45274348 |
T |
|
| Q |
310 |
taactcacattgaaaag |
326 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
45274347 |
taactcgcattgaaaag |
45274331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 340 - 511
Target Start/End: Complemental strand, 45270771 - 45270600
Alignment:
| Q |
340 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
439 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270771 |
gccggtgttatagaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
45270672 |
T |
|
| Q |
440 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
511 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45270671 |
ggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatc |
45270600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 344 - 511
Target Start/End: Complemental strand, 45274294 - 45274127
Alignment:
| Q |
344 |
gtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtc |
443 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274294 |
gtgtgatcgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtc |
45274195 |
T |
|
| Q |
444 |
ctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatc |
511 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45274194 |
ctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatc |
45274127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45294275 - 45293959
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45294275 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45294176 |
T |
|
| Q |
111 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
210 |
Q |
| |
|
| ||| |||||||| || || || |||||| || ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | | |
|
|
| T |
45294175 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45294076 |
T |
|
| Q |
211 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaaca |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
45294075 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45293976 |
T |
|
| Q |
309 |
ttaactcacattgaaaag |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45293975 |
-taactcacattgaaaag |
45293959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45303235 - 45302919
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45303235 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45303136 |
T |
|
| Q |
111 |
gcaaaaaccattgtcactggtagtaagaaccaaaacgccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc |
210 |
Q |
| |
|
| ||| |||||||| || || || |||||| || ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | | |
|
|
| T |
45303135 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45303036 |
T |
|
| Q |
211 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaaca |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
45303035 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45302936 |
T |
|
| Q |
309 |
ttaactcacattgaaaag |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45302935 |
-taactcacattgaaaag |
45302919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 38587643 - 38587600
Alignment:
| Q |
452 |
caccaagctgtggcatttagaaaccaaggagatatgtctgcttt |
495 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38587643 |
caccaagcagtggcatttagaaaccaaggagacatgtctgcttt |
38587600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
13 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
58 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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