View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_low_5 (Length: 522)
Name: NF17947_low_5
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 40093424 - 40093909
Alignment:
| Q |
16 |
atcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093424 |
atcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
40093523 |
T |
|
| Q |
116 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093524 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
40093623 |
T |
|
| Q |
216 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093624 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattag |
40093723 |
T |
|
| Q |
316 |
acaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093724 |
acaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgat |
40093823 |
T |
|
| Q |
416 |
actggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
501 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093824 |
actggcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
40093909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 66 - 501
Target Start/End: Original strand, 40062843 - 40063278
Alignment:
| Q |
66 |
gttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttc |
165 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |||||||| |
|
|
| T |
40062843 |
gttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttc |
40062942 |
T |
|
| Q |
166 |
cctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccact |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40062943 |
cctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccact |
40063042 |
T |
|
| Q |
266 |
atatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
365 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063043 |
atatgaaaaatgttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
40063142 |
T |
|
| Q |
366 |
ggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
465 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063143 |
ggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
40063242 |
T |
|
| Q |
466 |
tacagaggaccttttactcaaaccaaatgtcacatg |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063243 |
tacagaggaccttttactcaaaccaaatgtcacatg |
40063278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 60 - 483
Target Start/End: Original strand, 40081187 - 40081611
Alignment:
| Q |
60 |
tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagact |
159 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || || |
|
|
| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtct |
40081286 |
T |
|
| Q |
160 |
actttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaac |
259 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
40081287 |
acttaccctaagaaccaaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaat |
40081386 |
T |
|
| Q |
260 |
gccactatatgaaaaatgtttt-ttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattg |
358 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40081387 |
gccactatatgaaaaatgtttttttgctactaaccaatgtaatacatgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattg |
40081486 |
T |
|
| Q |
359 |
acttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactc |
458 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
40081487 |
acttcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactc |
40081586 |
T |
|
| Q |
459 |
atgcaactacagaggaccttttact |
483 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
40081587 |
atgcaactatagaggaccttatact |
40081611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 22012756 - 22012641
Alignment:
| Q |
313 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
412 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
|
|
| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
|
| Q |
413 |
gatactggcctacata |
428 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
22012656 |
gatactggccaacata |
22012641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
370 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
410 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University