View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17947_low_6 (Length: 511)
Name: NF17947_low_6
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 495
Target Start/End: Complemental strand, 45366627 - 45366144
Alignment:
| Q |
14 |
atgggggtgagggaatttagtgggtggaggtggaaatttctctggcaaaagaggt-tgtgtgagtgagaggcggggttattgacgacgttgcctcaccaa |
112 |
Q |
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| T |
45366627 |
atgggggtgagggaatttagtgggtggaggtggaaatttctctggcaaaagaggtgtgtgtgagtgagaggcggggttattgacgacgttgcctcgccaa |
45366528 |
T |
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| Q |
113 |
gtttgttaatgaaggaagatttgtgggtctgcactactctatagtgaaggttctttctaggttaaaccggcatattcttttttagttacattacattgac |
212 |
Q |
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| T |
45366527 |
gtttgttaatgaaggaagatttgtgggtctgcactactctatagtgaaggttctttctaggttaaaccggcatattcttttttagttacattacattgac |
45366428 |
T |
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| Q |
213 |
gctgaacgaggtcaatcttgcctttttggaggcttttgtgtttcgaagtatatggaaaagcccaacagcttccaaggcagtggtctttttatggaaattg |
312 |
Q |
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| T |
45366427 |
gctgaacgaggtcaatcttgcctttttggaggcttttgtgtttcgaagtatatggaaaagcccaacagcttccaaggcagtggtctttttatggaaattg |
45366328 |
T |
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| Q |
313 |
cttcataacagaattccgacaaaattcaacttagggtatggtggagtcattccttccattgggtatgtcggttgattgtgttttgtgt-----gacagga |
407 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45366327 |
cttcataatagaattccgacaaaattcaacttagggtatcgtggagtca----ttccattgggtatgtcggttgattgtgttttgtgtgacaggacagga |
45366232 |
T |
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| Q |
408 |
cggttgacacagctgtacatatgtttctccactgcaattttgcatcttttgtttggtatagtgtttttcggtggttgggcttaattat |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45366231 |
cggttgacacagctgtacatatgtttctccactgcaattttgcatcttttgtttggtatagtgtttttcggtggttgggcttaattat |
45366144 |
T |
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