View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_low_7 (Length: 501)
Name: NF17947_low_7
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Original strand, 40126481 - 40126952
Alignment:
| Q |
14 |
catgaacatgaacatgacaataattatgaacatccttgtcctcatcttcaccaccctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40126481 |
catgaacatgaacatgacaataattatgaacatcctcgtcctcatcttcaccactctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
40126580 |
T |
|
| Q |
114 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40126581 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
40126680 |
T |
|
| Q |
214 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggactctttccaatcctacatcaaccaattcgcacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40126681 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggactctttccaatcctacatcaaccaattcgaacc |
40126780 |
T |
|
| Q |
314 |
aaccttcaacattcgttcttcttgtggcttccaaactgagtggatctcacaaggttgtgtcaacgttactacaagacaacaatttgaagcacttgttcct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40126781 |
aaccttcaacattcgttcttcttgtggcttccaaactgagtggatctcacaaggttgtgtcaacgttactacaagacaacaatttgaagcacttgttcct |
40126880 |
T |
|
| Q |
414 |
aaatccaatattcaaaatatgcaatcaaattgtaaccaatcaattcaagataactcaccttgtgctctttgt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40126881 |
aaatccaatattcaaaatatgcaatcaaattgtaaccaatcaattcaagataactcaccttgtgctctttgt |
40126952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University