View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17947_low_9 (Length: 423)
Name: NF17947_low_9
Description: NF17947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17947_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 26564515 - 26564910
Alignment:
| Q |
18 |
ttctcactatggaaaacttgacataatgttcaacaatgctggctttcttggaaaccaatccaagaacaaaagcattgtgaacttcgacatcgaggaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26564515 |
ttctcactatggaaaacttgacataatgttcaacaatgctggctttcttggaaaccaatccaagaacaaaagcattgtgaacttcgacaccgaggaattc |
26564614 |
T |
|
| Q |
118 |
gaccgagtcatgagtgttaatgttaaaggagttgctttaggtatgaaacatgctgcaaaggttatgatacctagaggaattggatgcataatatccactt |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
26564615 |
gaccgagtcatgaatgttaatgttaaaggtgttgctttaggtatgaaacatgctgcaaaggttatgatacctagaggaaatggatgcatagtatccactt |
26564714 |
T |
|
| Q |
218 |
ctagtgtagctggagttttaggaggacttggtccacatgcttatacagcttcaaagcatgctatagttggattaacgaagaatgcttcttgtgaattggg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26564715 |
ctagtgtagctggagttttaggaggacttggtccacatgcttatacagcttcaaagcatgctatagttggattaacaaagaatgcttcttgtgaattggg |
26564814 |
T |
|
| Q |
318 |
aaaatatggtataagggttaattgcatttctccatttggtgttgcaacatctatgcttgtgaatgcttggagaaatggagaagatgaagttgatga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26564815 |
aaaatatggtataagggttaattgcatttctccatttggtgttgcaacatctatgcttgtgaatgcttggagaaatggagaagatgaagttgatga |
26564910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University