View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17949_high_3 (Length: 435)
Name: NF17949_high_3
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 159 - 419
Target Start/End: Complemental strand, 30960526 - 30960266
Alignment:
| Q |
159 |
cacgactagttacaaaacttaatcttagtactactttccattctagacttataaacttcgatctttaagagagaatgaagaaattgttgttgataaacaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960526 |
cacgactagttacaaaacttaatcttagtactactttccattctagacttataaacttcgatctttaagagagaatgaagaaattgttgttgataaacaa |
30960427 |
T |
|
| Q |
259 |
gtgttaggtaactagccgtgtactaactatattagtgaaattttacgtgaagttgtatcgatagaaatcgttcactttttacttggtaaaccatgacaat |
358 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960426 |
gtgttaggtaactagccatgtactaactatattagtgaaattttacgtgaagttgtatcgatagaaatcgttcactttttacttggtaaaccatgacaat |
30960327 |
T |
|
| Q |
359 |
atgatataaaagtcaaccatgatggcttcactaagaaattcatctttgttcacaacacaca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960326 |
atgatataaaagtcaaccatgatggcttcactaagaaattcatctttgttcacaacacaca |
30960266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 30960661 - 30960548
Alignment:
| Q |
19 |
gtggatattgttgtgtgttcacatgaatgatgatcgctcctcacaaagagaatatcttttatgctagatgtttagttcaaggaaaattatattcttcaat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960661 |
gtggatattgttgtgtgtccacatgaatgatgatggctcctcacaaagagaatatcttttatgctagatgtttagttcaaggaaaattatattcttcaat |
30960562 |
T |
|
| Q |
119 |
aatcggtgttggta |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30960561 |
aatcggtgttggta |
30960548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 30960514 - 30960546
Alignment:
| Q |
266 |
gtaactagccgtgtactaactatattagtgaaa |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
30960514 |
gtaactagtcgtgtactaactatattagtgaaa |
30960546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 38790770 - 38790863
Alignment:
| Q |
162 |
gactagttacaaaacttaatcttagtactactttccattctagac-ttataaacttcgatctttaagagagaatgaagaaattgttgttgataa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | || |||||||| || ||||| || ||| |||||||||| ||||||| |
|
|
| T |
38790770 |
gactagttacaaaacttaatcttagtactactttccatcctaggctttttaaacttcaatggttaagtgaaaattgagaaattgttattgataa |
38790863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University