View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_high_5 (Length: 377)
Name: NF17949_high_5
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 41062069 - 41062445
Alignment:
| Q |
1 |
aaagctgatatgtttcttaataacaatgatatcctactacaaactgtcagcattgtgcctacttctgcaataagtggtgaaggactctcagatatcaaat |
100 |
Q |
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| T |
41062069 |
aaagctgatatgtttcttaataacaatgatatcctacgacaaactgtcagcattgtgcctacttctgcaataagtggcgaaggactctcagatatcaaat |
41062168 |
T |
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| Q |
101 |
cagaattgattaagtggacccagaaaactatgcttaatcaacttacatacacggatcagttgcaggttacctattatttattagtaattatcattccatg |
200 |
Q |
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| T |
41062169 |
cagaattgattaagtggacccagaaaactatgcttaatcaacttacatacacggatcagttgcaggttacctattatttattagtaattatcattccatg |
41062268 |
T |
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| Q |
201 |
ttaaaccattaccttattcttatttgtttgtattgtgcctgctagtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41062269 |
ttaaaccattaccttattcttatttgtttgtattgtgcctgctagtgtactgttttggatgtcaagctccttcaaggccatggaaccgctatcaatgttg |
41062368 |
T |
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| Q |
301 |
ttttagttaatggtgttcttcatgtaggagatcaaattgctctatgcggaactcaggcaagcttctttcattctatt |
377 |
Q |
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| T |
41062369 |
ttttagttaatggtgttcttcatgtaggagatcaaattgctctatgcggaactcaggcaagcttctttcattctatt |
41062445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 41373324 - 41373405
Alignment:
| Q |
294 |
aatgttgttttagttaatggtgttcttcatgtaggagatcaaattgctctatgcggaactcaggcaagcttctttcattcta |
375 |
Q |
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| T |
41373324 |
aatgttgttttagttaatggtgttctacatgaaggagatcaaatagctgtatgtggaaggcaggcaagcatctctgattcta |
41373405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 183259 - 183352
Alignment:
| Q |
244 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcatgtaggagatcaaat |
337 |
Q |
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| T |
183259 |
agtgtactgttttggaagtcaaggttattgaaggctatggaactactattaatgttgttttagttaatggtgttcttcatgaaggagatcaaat |
183352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 29219650 - 29219608
Alignment:
| Q |
295 |
atgttgttttagttaatggtgttcttcatgtaggagatcaaat |
337 |
Q |
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| T |
29219650 |
atgttgttttagttaatggtgttcttcatgaaggtggtcaaat |
29219608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 44628104 - 44628197
Alignment:
| Q |
244 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcatgtaggagatcaaat |
337 |
Q |
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||||||| |||||||| |||||| | || ||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
44628104 |
agtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaat |
44628197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 44606620 - 44606713
Alignment:
| Q |
244 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcatgtaggagatcaaat |
337 |
Q |
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| T |
44606620 |
agtgtaccgttttggaagtcaaggttatcgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaat |
44606713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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