View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17949_high_6 (Length: 350)
Name: NF17949_high_6
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 20191286 - 20190957
Alignment:
| Q |
13 |
aatataagatcttagcatcaacattcaatgatgatgcattgacaaaactcaacgaagatttcaaatgtaattttaacatagcaatcaaatacaatagaag |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20191286 |
aatataagatcttagcttcaacattcaatgatgatgcattgacaaaactcaacaaagatttcaaatataattttaacatagcaatcaaatacaatagaag |
20191187 |
T |
|
| Q |
113 |
atttaataacagaaatgacaaagtgagttacaagcgagnnnnnnnnnnn-----cgttcctgcttatctcttattaatctttcgatagtctacaatatct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20191186 |
atttaataacagaaatgacaaagtgagtaacaagcgagtttttttttttttttccgttcctgcttatctcttattaatctttcgatagtctacaatatct |
20191087 |
T |
|
| Q |
208 |
tatttttaattttgattaatttcataacaatattcactatcatatagcttagaaaagaaaattacagtactatttttcattttatcctagtataccaatt |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20191086 |
tattttgaattttgattaatttcataacaatattcactatcatatagcttagaaaagaaaattacagtactatttttcattttatcctagtataccaatt |
20190987 |
T |
|
| Q |
308 |
ataaatgatattcctcgacaaggaaaatat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20190986 |
ataaatgatattcctcgacaaggaaaatat |
20190957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University