View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_high_8 (Length: 305)
Name: NF17949_high_8
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 46736504 - 46736205
Alignment:
| Q |
1 |
ttggacagcatctaggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgattataataaataggaaatttagaatgatgtatgaaactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
46736504 |
ttggacagcatctaggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgaatataataaataggaaatgtagaatgatgtatgaaactta |
46736405 |
T |
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| Q |
101 |
ataaagtatttcaagagaaaatgtctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataaga |
200 |
Q |
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| T |
46736404 |
ataaagtatttcaagagaaaacatctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataaga |
46736305 |
T |
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| Q |
201 |
gtaaatttagttaaaaatacttaatatttatggtcatatgatgacagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736304 |
gtaaatttagttaaaaatacttaatatttatggtcatatgatgaaagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatg |
46736205 |
T |
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