View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_low_1 (Length: 842)
Name: NF17949_low_1
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 766; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 1 - 837
Target Start/End: Complemental strand, 49766705 - 49765869
Alignment:
| Q |
1 |
taagagaaagaagaagaaaacctctgtttctgcatctgctacgacgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagt |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766705 |
taagaaaaagaagaagaaaacctctgtttctgcatctgctacgtcgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagt |
49766606 |
T |
|
| Q |
101 |
aactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766605 |
aactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttcca |
49766506 |
T |
|
| Q |
201 |
agagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttnnnnnnnn |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766505 |
agagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgttgaagaaga |
49766406 |
T |
|
| Q |
301 |
nnnnnnnnntaacagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766405 |
agaagaagataacagtcctaatagcaacaacacaggttcttttgaacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggt |
49766306 |
T |
|
| Q |
401 |
gatttctttgaaagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctaattcta |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49766305 |
gatttctttgaaagaatttcaactgggtttggagattgtactctcagaagagttgaatctcaacgtgaaggtaaatcaaagggagtagttgctagttcta |
49766206 |
T |
|
| Q |
501 |
atggtattgcttctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggaggaatattcagtgg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766205 |
atggtattgcttctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggaggaatattcagtgg |
49766106 |
T |
|
| Q |
601 |
tttcatgatgacatcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggaggaggaaaacaa |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766105 |
tttcatgatgacatcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggaggaggaaaacaa |
49766006 |
T |
|
| Q |
701 |
ggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaagaga |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766005 |
ggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaagaga |
49765906 |
T |
|
| Q |
801 |
atcatcagaataatagaagagatatttttggagatgc |
837 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| |
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| T |
49765905 |
atcatcagaataatagaagagatattattagagatgc |
49765869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 345 - 471
Target Start/End: Original strand, 14138362 - 14138488
Alignment:
| Q |
345 |
aacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgaaagaatttcaactgggtttggagattgtactct |
444 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| | |
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| T |
14138362 |
aacgtaaggtttcaagatctagatctgttggatgtggtagcagaagcttctctggtgatttctttgagaaaatctcaactgggtttggagattgtacctt |
14138461 |
T |
|
| Q |
445 |
cagaagagttgaatctcaacgtgaagg |
471 |
Q |
| |
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|||||||| ||||||||||||||||| |
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| T |
14138462 |
aagaagagtggaatctcaacgtgaagg |
14138488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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