View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_low_11 (Length: 235)
Name: NF17949_low_11
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 9825605 - 9825804
Alignment:
| Q |
11 |
gagaagaagaccaatagattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttttc |
110 |
Q |
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| T |
9825605 |
gagaagaagaccaatagattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttttc |
9825704 |
T |
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| Q |
111 |
agtaatccaaagctgaaataaatttctgtagtaatttgagaaacagaagtgtatgcaatatgatgtgatgcaatgcaagttcaactagactcaagtcaca |
210 |
Q |
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| T |
9825705 |
agtaatcc-aagctgaaataaatttctgcagtaatttgagaaaca-----gtgtgcaata-----cgatgcactgcaagttcaactagactcaagtcaca |
9825793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 10559454 - 10559544
Alignment:
| Q |
13 |
gaagaagaccaatagattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaattatgttatgcatatttt |
108 |
Q |
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| T |
10559454 |
gaagaagaccaactgatgaaatgtttttagatggtcaaa-----atctgcatttgtatgttgaaaattcatttcctaataatgttatgcagatttt |
10559544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 10559910 - 10559975
Alignment:
| Q |
109 |
tcagtaatccaaagctgaaataaatttctgtagtaatttgagaaacagaagtgtatgcaatatgatg |
175 |
Q |
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| T |
10559910 |
tcagtaatc-aaagctaaaataaatttctgcaataatttcagaaatagaagtttatgcaatatgatg |
10559975 |
T |
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