View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_low_2 (Length: 478)
Name: NF17949_low_2
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 25951172 - 25951620
Alignment:
| Q |
7 |
gcagcacagacacttcagattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagtcagtgaccgttggatcg |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25951172 |
gcagcactgacacttcagattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagttagtgaccgttggatcg |
25951271 |
T |
|
| Q |
107 |
agatcaaacaatgcaaatttcaagatgagtatctacttgaaatctgccgtgtttgatcttgagttattagttgtatcggtgtgtggtgtccgtgtaagtg |
206 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25951272 |
agatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtgtgtggtgtccgtgtaagtg |
25951371 |
T |
|
| Q |
207 |
acactactttaactaccattacnnnnnnnnnnnnnnnnnnntggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccaccta |
306 |
Q |
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||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25951372 |
acactacttcaactaccattac-aaaataaaataaaaaaaatggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccaccta |
25951470 |
T |
|
| Q |
307 |
ttttaagcatagaatctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttt |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25951471 |
ttttaagcatagagtctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttt |
25951570 |
T |
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| Q |
407 |
tctgacatgagatggatcaaccttatagaaaacaggaataataagccttt |
456 |
Q |
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| T |
25951571 |
cctgacatgagatggatcaaccttatagaaaacaggaataataagccttt |
25951620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 25960422 - 25960871
Alignment:
| Q |
7 |
gcagcacagacacttc-agattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagtcagtgaccgttggatc |
105 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25960422 |
gcagcaccgacactttgagattgaggggcaacacatgttgatatataattctatgtagtcaccaaagttccgcattcacatagttagtgaccgttggatc |
25960521 |
T |
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| Q |
106 |
gagatcaaacaatgcaaatttcaagatgagtatctacttgaaatctgccgtgtttgatcttgagttattagttgtatcggtgtgtggtgtccgtgtaagt |
205 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25960522 |
gagatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtgtgtggtgtccgtgtaagt |
25960621 |
T |
|
| Q |
206 |
gacactactttaactaccattacnnnnnnnnnnnnnnnnnnntggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccacct |
305 |
Q |
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|||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960622 |
gacactacttcaactaccattacaaaataaaataaaaaaaa-tggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccacct |
25960720 |
T |
|
| Q |
306 |
attttaagcatagaatctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtt |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960721 |
attttaagcatagagtctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtt |
25960820 |
T |
|
| Q |
406 |
ttctgacatgagatggatcaaccttatagaaaacaggaataataagccttt |
456 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25960821 |
tcctgacatgagatggatcaaccttatagaaaacaggaataataagccttt |
25960871 |
T |
|
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