View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17949_low_4 (Length: 380)
Name: NF17949_low_4
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 42756674 - 42756309
Alignment:
| Q |
1 |
tctcatatataaatgtcaatctcatgatatgtcccctatacttagattatgttggctaatttatgcaaagactttcttcaaggtataaaattaagaattt |
100 |
Q |
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| T |
42756674 |
tctcatatataaatatcaatctcatgatatgtcccctatacttagattatgttggctaatttatgcaaagactttcttcaaggtataaaattaagaattt |
42756575 |
T |
|
| Q |
101 |
aaattgacattttctaatttccagctaaagaaaattactaatccgattcgatataataattcaaaaatattgtaacaaaaatgtcttttagtcaattttc |
200 |
Q |
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| T |
42756574 |
aaattgacattttctaatttcaagctaaagaaaattactaatccgattcgatataataattcaaaaatattgtaacaaaaatgtcttttagtcaattttc |
42756475 |
T |
|
| Q |
201 |
agtttgatggtttttgtcaatcggtgtgtgaccgatcagaaatgagtcaattgcttttaaaggtggacatttggcagtg--acatccttaccaacactaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42756474 |
agtttgatggtttttgtcaatcggtgtgtgaccgatcagaaatgagtcaattgcttttaaaggtggacatttggcagtgacacatccttaccaacactaa |
42756375 |
T |
|
| Q |
299 |
tttatattatctgcccataatcaataagcatataagtatatgcctatggtcatgacagtttagtac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42756374 |
tttatattatctgcccataatcaataagcatataagtacatgcctatggtcatgacagtttagtac |
42756309 |
T |
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