View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17949_low_9 (Length: 247)
Name: NF17949_low_9
Description: NF17949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17949_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 34592593 - 34592806
Alignment:
| Q |
19 |
atctatttcagcggagatttcttttgaaacaaacgattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34592593 |
atctatttcagcggagatttcttttgaaacaaacaattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaa |
34592692 |
T |
|
| Q |
119 |
gaacaatataaggtcaattttgtagctatattacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagt |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||| |||||| | |
|
|
| T |
34592693 |
aaacaatataaggtcaattttgtaggtatattacctcccataaatctcttgcatcaacaatggcttctggttctaggcctatttcagaccaggatgcaat |
34592792 |
T |
|
| Q |
219 |
taccgttgcctttg |
232 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
34592793 |
taccgttgcatttg |
34592806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 34577227 - 34577310
Alignment:
| Q |
149 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||| || | ||||||||| | ||||| || |||||||| ||||| || ||||| |||| |
|
|
| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttg |
34577310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 32599926 - 32600009
Alignment:
| Q |
149 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
32599926 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttg |
32600009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 32589478 - 32589561
Alignment:
| Q |
149 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || |||||||||||||||| ||||| |||| |
|
|
| T |
32589478 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgcatttg |
32589561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University