View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1794_high_4 (Length: 438)
Name: NF1794_high_4
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 69 - 427
Target Start/End: Complemental strand, 38997952 - 38997612
Alignment:
| Q |
69 |
ttaattgcagtgcttattattgatagaatcatggttttaaattgcggtaacaaatggctaatgcctaatgcatctgcaatataaaggattttgagctgtg |
168 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38997952 |
ttaattgcagagcttattattgatagaatcatggttttaaattgcggtaacaaatggctaatgcctaatgcatctgcaatataaaggattttgagctgtg |
38997853 |
T |
|
| Q |
169 |
tgcaaggccacaatttctcgctggtctatattataaccgtaacagcaatttaaaactatggatataatcatgatacctctccaacaccaacgcgaaatgt |
268 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38997852 |
tgcaaggccacattttctcgct------------------aacagcaatttaaaactatggatataatcatgatacctctccaacaccaacgcgaaatgt |
38997771 |
T |
|
| Q |
269 |
aagtggcttgccacgattgtagctactgtcgaaaacttttccattctccaatctccccacatagtgtgcctaacattaacataacggtcaagttaaacac |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38997770 |
aagtggcttgccacgattgtagctgctgtcgaaaacttttccattctccaatctccccacatagtgtgcctaacattaacataacggtcaagttaaacac |
38997671 |
T |
|
| Q |
369 |
cgggcaaagggaacaatattcgatataaatgttagttacaaagttagttagttgttcat |
427 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38997670 |
cggaaaaagggaacaatattcgatataaatgttagttacaaagttagttagttgttcat |
38997612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University