View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1794_high_9 (Length: 238)
Name: NF1794_high_9
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 27914749 - 27914541
Alignment:
| Q |
13 |
tgtggatgatatgaaggcgggagagttaatagatagtgacactggaaaatggatagttgatctggttaatttctacttcaatcctcaagtggcaaatcaa |
112 |
Q |
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| T |
27914749 |
tgtggatgatatgaaggcgggagagttaatagatagtgacactggaaaatggatagttgatctggttaatttctacttcaatcctcaagtggcaaatcaa |
27914650 |
T |
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| Q |
113 |
atcttgattatgccaa-ttcacataagtgttcttggaaattcacatcacatggagagtacatcctaaggtcggcataccactatatgacagaaagcttaa |
211 |
Q |
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| T |
27914649 |
atcttgattatgccaatttcacataagtgttctaggaaattcacatcacatggagagtacatcctaaggtcggcataccactatatgacagaaagcttaa |
27914550 |
T |
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| Q |
212 |
tggataatc |
220 |
Q |
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||||||||| |
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| T |
27914549 |
tggataatc |
27914541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 10370430 - 10370319
Alignment:
| Q |
13 |
tgtggatgatatgaaggcgggagagttaatagatagtgacactggaaaatggatagttgatctggttaatttctacttcaatcctcaagtggcaaatcaa |
112 |
Q |
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||||||| ||||||||| | |||||||||||||||| |||| ||||||| | ||||||| | |||||||||||| |||||||||||||||||| || |
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| T |
10370430 |
tgtggataatatgaaggttgaagagttaatagatagtaccactagaaaatgaaaagttgattcagctaatttctactttaatcctcaagtggcaaattaa |
10370331 |
T |
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| Q |
113 |
atcttgattatg |
124 |
Q |
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| T |
10370330 |
attttgactatg |
10370319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 10370286 - 10370207
Alignment:
| Q |
141 |
ttcttggaaattcacatcacatggagagtacatcctaaggtcggcataccactatatgacagaaagcttaatggataatc |
220 |
Q |
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|||||||||||| ||||||||||||||| || |||||| |||||||| ||||| ||| |||||||||||||||||| |
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| T |
10370286 |
ttcttggaaatttacatcacatggagagcaccatgtaaggtttgcataccattatatcacaaaaagcttaatggataatc |
10370207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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