View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1794_low_10 (Length: 244)
Name: NF1794_low_10
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 4272954 - 4273160
Alignment:
| Q |
18 |
aagaaatacctggatggcaaatgtcatatcagaaatcgacttcccatattcagcaaataaagcctctgttgcaaaaaccactcccagtcctgttgcagcc |
117 |
Q |
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| T |
4272954 |
aagaaatacctggatggcaaatgtcatatcagaaatcgacttcccatattcagcaaataaagcctctgttgcaaaaaccactcccagtcctgttgcagcc |
4273053 |
T |
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| Q |
118 |
tctcttcccaatgaacctccaagatcctacaggccaaatgttttaaaccaatttcttgaatcttgaatgataaattattattgtgtatacaagaaaacta |
217 |
Q |
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| T |
4273054 |
tctcttcccaatgaacctccaagatcctgcaggccaaatgttttaaaccaatttcttgaatcttgaatgataaattattattgtgtatacaagaaaacta |
4273153 |
T |
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| Q |
218 |
tgattgt |
224 |
Q |
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||||||| |
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| T |
4273154 |
tgattgt |
4273160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 41211677 - 41211548
Alignment:
| Q |
21 |
aaatacctggatggcaaatgtcatatcagaaatcgacttcccatattcagcaaataaagcctctgttgcaaaaaccactcccagtcctgttgcagcctct |
120 |
Q |
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||||||||||||| ||||||| |||||||| ||| | |||| ||||| || | ||||||||||||||||| ||||| || ||||| || ||||| |
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| T |
41211677 |
aaatacctggatgacaaatgtgtggtcagaaattgaccttccattttcagttaaccatgcctctgttgcaaaaactactccgagacctgtggccgcctcc |
41211578 |
T |
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| Q |
121 |
cttcccaatgaacctccaagatcctacagg |
150 |
Q |
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| T |
41211577 |
ctacccaaagaacctccaagatcctacagg |
41211548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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