View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1794_low_13 (Length: 214)

Name: NF1794_low_13
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1794_low_13
NF1794_low_13
[»] chr7 (4 HSPs)
chr7 (1-143)||(4996369-4996511)
chr7 (52-129)||(4997145-4997223)
chr7 (66-129)||(33223193-33223257)
chr7 (46-105)||(48850478-48850537)
[»] chr4 (5 HSPs)
chr4 (45-140)||(53687698-53687794)
chr4 (67-126)||(55245990-55246049)
chr4 (53-126)||(9041876-9041950)
chr4 (107-141)||(53688489-53688523)
chr4 (52-132)||(53894373-53894454)
[»] chr6 (5 HSPs)
chr6 (45-120)||(4221594-4221669)
chr6 (66-129)||(19802550-19802614)
chr6 (48-105)||(1634940-1634997)
chr6 (67-128)||(4222773-4222834)
chr6 (52-105)||(19803249-19803302)
[»] chr8 (3 HSPs)
chr8 (46-127)||(44006380-44006462)
chr8 (84-140)||(17773007-17773064)
chr8 (66-129)||(44007544-44007608)
[»] chr1 (2 HSPs)
chr1 (47-105)||(31868332-31868390)
chr1 (84-140)||(19445001-19445058)
[»] chr2 (2 HSPs)
chr2 (47-144)||(22436388-22436485)
chr2 (78-127)||(22424797-22424846)
[»] scaffold0272 (1 HSPs)
scaffold0272 (53-127)||(8895-8969)
[»] chr3 (2 HSPs)
chr3 (66-140)||(45244065-45244140)
chr3 (57-105)||(22239256-22239304)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4996369 - 4996511
Alignment:
Q  1 tacaatagatctctacaaaaacataaaacaatagacaaaaataacaagaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  4996369 tacaatagatctctacaaaaacataaaacaatagacaaaaataacaagaagattgcttttctgacattcaaaacgtcatattgacacatgaaaatgacgt 4996468  T
Q  101 ttttattccgacggtagttaactaccgttccaaatatacagca 143  Q
    ||||| || | ||||||||||||||||||||||||||||||||    
T  4996469 ttttactctggcggtagttaactaccgttccaaatatacagca 4996511  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 4997223 - 4997145
Alignment:
Q  52 attgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta-ttccgacggtagttaactaccgtt 129  Q
    ||||||||| | | ||||||||| ||||||||||||||| ||||||||||||||  |||| |||||||||||| |||||    
T  4997223 attgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcggtagttaactgccgtt 4997145  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 33223257 - 33223193
Alignment:
Q  66 attcaaaacatcatattgacacatgaaaatgacgtttttat-tccgacggtagttaactaccgtt 129  Q
    ||||||||| ||||||||||||||  ||||||| |||| |  |||||||||||||||||||||||    
T  33223257 attcaaaacgtcatattgacacatagaaatgacattttaacctccgacggtagttaactaccgtt 33223193  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 48850478 - 48850537
Alignment:
Q  46 aagaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta 105  Q
    ||||| ||||| ||||| | ||||||||| | ||||||||||||||||||||| ||||||    
T  48850478 aagaaaattgcatttctgacattcaaaacgttatattgacacatgaaaatgacattttta 48850537  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 53687698 - 53687794
Alignment:
Q  45 caagaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttat-tccgacggtagttaactaccgttccaaatataca 140  Q
    |||||| ||| ||||||| | ||||||||| |||||||||||||| |||||||| ||||||| |||  |||||||||||||||||| ||||||||||    
T  53687698 caagaaaattacttttctgacattcaaaacgtcatattgacacataaaaatgacatttttatctccagcggtagttaactaccgtttcaaatataca 53687794  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 55245990 - 55246049
Alignment:
Q  67 ttcaaaacatcatattgacacatgaaaatgacgtttttattccgacggtagttaactacc 126  Q
    |||||||| ||||||||||||||| |||||||||||||| | |   ||||||||||||||    
T  55245990 ttcaaaacgtcatattgacacatggaaatgacgtttttacttcagtggtagttaactacc 55246049  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 9041876 - 9041950
Alignment:
Q  53 ttgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta-ttccgacggtagttaactacc 126  Q
    |||||||| | | ||||||||| ||||||||| ||||| ||||||||||||||  || | |||||||||||||||    
T  9041876 ttgcttttatgacattcaaaacgtcatattgatacatggaaatgacgtttttacctcgggcggtagttaactacc 9041950  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 53688523 - 53688489
Alignment:
Q  107 tccgacggtagttaactaccgttccaaatatacag 141  Q
    ||||||||||||||||||||||||||| |||||||    
T  53688523 tccgacggtagttaactaccgttccaagtatacag 53688489  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 53894373 - 53894454
Alignment:
Q  52 attgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttattcc-gacggtagttaactaccgttcca 132  Q
    ||||||||||| | || |||| |  |||| |||||| |||||||||||||||||  || ||||||||||||||||| |||||    
T  53894373 attgcttttctgacatacaaagctccataatgacacctgaaaatgacgtttttacccctgacggtagttaactaccattcca 53894454  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 4221594 - 4221669
Alignment:
Q  45 caagaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttattccgacggtagtta 120  Q
    ||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||| |||  |||||||||    
T  4221594 caagaagattgcttttctaaccttcaaaatgtcatattgacacatgaaaatgacgtttttactccagcggtagtta 4221669  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 19802550 - 19802614
Alignment:
Q  66 attcaaaacatcatattgacacatgaaaatgacgttttta-ttccgacggtagttaactaccgtt 129  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  19802550 attcaaaacatcatattgacacatgaaaatgatgtttttacctccggcggtagttaactaccgtt 19802614  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 1634997 - 1634940
Alignment:
Q  48 gaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta 105  Q
    ||||||||||||||| | ||||||||| | ||||||||||||| ||||||||||||||    
T  1634997 gaagattgcttttctgacattcaaaacgttatattgacacatggaaatgacgttttta 1634940  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 4222834 - 4222773
Alignment:
Q  67 ttcaaaacatcatattgacacatgaaaatgacgtttttattccgacggtagttaactaccgt 128  Q
    |||||||| ||||||||||||||||||||||||||||||  ||  |||||||||||| ||||    
T  4222834 ttcaaaacgtcatattgacacatgaaaatgacgtttttaccccagcggtagttaactgccgt 4222773  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 19803302 - 19803249
Alignment:
Q  52 attgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta 105  Q
    |||||| |||| | ||||||||| | ||||||||||||||||||||| ||||||    
T  19803302 attgctcttctgacattcaaaacgtaatattgacacatgaaaatgactttttta 19803249  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 44006380 - 44006462
Alignment:
Q  46 aagaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttat-tccgacggtagttaactaccg 127  Q
    ||||||||| ||| ||| | ||||||||| ||||||||||| ||||||||||||||||||| | || ||||||||||||||||    
T  44006380 aagaagattacttctctgacattcaaaacttcatattgacatatgaaaatgacgtttttatcttcggcggtagttaactaccg 44006462  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 17773007 - 17773064
Alignment:
Q  84 acacatgaaaatgacgtttttattccga-cggtagttaactaccgttccaaatataca 140  Q
    ||||||||||||||||||||||  || | ||||||||||||||||||||| |||||||    
T  17773007 acacatgaaaatgacgtttttacccccaacggtagttaactaccgttccacatataca 17773064  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 44007608 - 44007544
Alignment:
Q  66 attcaaaacatcatattgacacatgaaaatgacgtttttattc-cgacggtagttaactaccgtt 129  Q
    ||||||||||||||||||||| ||  ||||||||||||||| | |  ||||||||||||||||||    
T  44007608 attcaaaacatcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgtt 44007544  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 31868332 - 31868390
Alignment:
Q  47 agaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta 105  Q
    |||| ||||||||| | ||||||||||| |||| |||||||||||||||||||||||||    
T  31868332 agaaaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgttttta 31868390  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 19445058 - 19445001
Alignment:
Q  84 acacatgaaaatgacgtttttattccga-cggtagttaactaccgttccaaatataca 140  Q
    ||||||||||||||||||||||  || | ||||||||||||||||||||| |||||||    
T  19445058 acacatgaaaatgacgtttttacccccaacggtagttaactaccgttccacatataca 19445001  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 22436485 - 22436388
Alignment:
Q  47 agaagattgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttattccgacggtagttaactaccgttccaaatatacagcac 144  Q
    |||| |||| |||||| |||||||||   ||||||| ||||||| |||||| |||||||  || ||| ||||||||||||||||||| ||| ||||||    
T  22436485 agaaaattgtttttctgatattcaaattgtcatattaacacatggaaatgatgtttttaccccaacgatagttaactaccgttccaagtattcagcac 22436388  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 22424797 - 22424846
Alignment:
Q  78 atattgacacatgaaaatgacgtttttattccgacggtagttaactaccg 127  Q
    |||||||||||||||||| || |||||| |||  ||||||||||||||||    
T  22424797 atattgacacatgaaaataacatttttactccagcggtagttaactaccg 22424846  T

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Target: scaffold0272 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 8895 - 8969
Alignment:
Q  53 ttgcttttctaatattcaaaacatcatattgacacatgaaaatgacgtttttattccgacggtagttaactaccg 127  Q
    |||||||| ||| || |||||| ||||| ||||| ||  |||||||||||||| ||| |||||||||||||||||    
T  8895 ttgcttttttaacatacaaaacttcataatgacatatagaaatgacgtttttactccaacggtagttaactaccg 8969  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 45244140 - 45244065
Alignment:
Q  66 attcaaaacatcatattgacacatgaaaatgacgtttttattc-cgacggtagttaactaccgttccaaatataca 140  Q
    ||||||||| |||||||||||| || ||||||| |||||| || |  |||| |||||||||||||| |||||||||    
T  45244140 attcaaaacttcatattgacacttgtaaatgacatttttactctcagcggtggttaactaccgttcaaaatataca 45244065  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 22239304 - 22239256
Alignment:
Q  57 ttttctaatattcaaaacatcatattgacacatgaaaatgacgttttta 105  Q
    |||||| | ||||||||  ||||||||||||||||||||||| ||||||    
T  22239304 ttttctgacattcaaaatgtcatattgacacatgaaaatgacattttta 22239256  T

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