View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1794_low_2 (Length: 586)
Name: NF1794_low_2
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Original strand, 40179473 - 40180026
Alignment:
| Q |
8 |
gagcagagaatggtgatccagttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatag |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179473 |
gagcagagaatggtgatcaagttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatag |
40179572 |
T |
|
| Q |
108 |
tgacaaaatggaatggagcactgaggaggaaaacaatgagacaaacatgaatggaaatatggttaacagtgcattcaaagcaccaaatgctaagaaatcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40179573 |
tgacaaaatggaatggagcactgaggaggaaaacaatgagacaaacat---------tatggttaacagtccattcaaagcaccaaatgctaagaaatcc |
40179663 |
T |
|
| Q |
208 |
aacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179664 |
aacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagt |
40179763 |
T |
|
| Q |
308 |
ttcgtaattatatttcaatcaatttgattgtactattgctcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatca |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179764 |
ttcgtaattatatttcagtcaatttgattgtactattgctcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatca |
40179863 |
T |
|
| Q |
408 |
ttaaaatccaaaaaagaagagctgaagacattagtttgagtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179864 |
ttaaaatccaaaaaagaagagctgaagacattagtttgagtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagat |
40179963 |
T |
|
| Q |
508 |
tatcgtttacttttttcttattgatcaattattttcttgttgctttgcactgataagcagaga |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179964 |
tatcgtttacttttttcttattgatcaattattttcttgttgctttgcactgataagcagaga |
40180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University