View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1794_low_3 (Length: 552)
Name: NF1794_low_3
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 5811418 - 5811928
Alignment:
| Q |
11 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811418 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcttcctccctgcaacataataacaataaaatgataaaaccaacacatgattaata |
5811517 |
T |
|
| Q |
111 |
tattaagatcaattgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactatcagaagacatatttattcagtagaaaaataataaatg |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
5811518 |
tattaagat---ttgaaatgacaaaatcattgaaagatattagtaagataaaaaattaactgtcggaagacatattcattcagtagaaaaataataaatg |
5811614 |
T |
|
| Q |
211 |
gaaaagcaggaaaaacactatgaaagtacgtggtcgtgtatggcagattacgtacaaacaggcgacacgactcaggaacttatttcttaacttctggatt |
310 |
Q |
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| T |
5811615 |
gaaaagcaggaaaaacactatgaaagtacgtggtcgtgtatggcagattacgtacaaacagtcgacacgactcaggaacttctttcttaacttctggatt |
5811714 |
T |
|
| Q |
311 |
tgataatttctcctcttcctcggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5811715 |
tgataatttctcctcttcctcggttgcagtcccttgagacttatcattggcaacatcctctccgaaaatatcttcttggccctctagatctaactcttgg |
5811814 |
T |
|
| Q |
411 |
gcaccacttcctgggtttctttcggaagggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatcatcgacagcaaatt |
510 |
Q |
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| T |
5811815 |
gcaccac-------------ttcggaagggttattaccacaattttcttcacattcactagctgggctacggttatctttgtcatcatggacagcaaatt |
5811901 |
T |
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| Q |
511 |
ctgaatcactggtgacattgtcatttc |
537 |
Q |
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| T |
5811902 |
ctgaatcactcgtgacattgtcatttc |
5811928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 232 - 496
Target Start/End: Original strand, 37743205 - 37743469
Alignment:
| Q |
232 |
gaaagtacgtggtcgtgtatggcagattacgtacaaacaggcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctc |
331 |
Q |
| |
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|||| |||||||||| |||||||||||||| |||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||| | |||||||||| |
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| T |
37743205 |
gaaattacgtggtcgaatatggcagattacggacaaacagtcgacacggctcagaaactcctttcttatcttctggatttgataattgcccctcttcctc |
37743304 |
T |
|
| Q |
332 |
ggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctt |
431 |
Q |
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| T |
37743305 |
agttgcattcacttgagacttatcattggcaacatcctttccaacggtatttttttggtcttctagatctaactcttgagcaccacttcttggggttgtt |
37743404 |
T |
|
| Q |
432 |
tcggaagggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatc |
496 |
Q |
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|| ||||||||||||| | |||||||||| |||| |||| | ||| | |||||||||||||| |
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| T |
37743405 |
tcagaagggttattacaacgattttcttcatgttcagtagcatgactatgtttatctttgtcatc |
37743469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 237 - 499
Target Start/End: Original strand, 37764393 - 37764655
Alignment:
| Q |
237 |
tacgtggtcgtgtatggcagattacgtacaaacaggcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctcggttg |
336 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||| | |||||||||| |||| |
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| T |
37764393 |
tacgtggtcgaatatggcagattacggacaaacagtcgacacggctcagaaactcctttcttatcttctggatttgataattgcccctcttcctcagttg |
37764492 |
T |
|
| Q |
337 |
cagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctttcgga |
436 |
Q |
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| || ||||||||||||||||||| ||||||| ||| | ||||| ||||||| | ||||||||||||||||| |||||||||| ||| ||||||| | |
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| T |
37764493 |
aattcacttgagacttatcattggctacatcctttccaacagtattttcttggtcttctagatctaactcttgagcaccacttcttggtgttctttcaaa |
37764592 |
T |
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| Q |
437 |
agggttattaccataattttcttcacattcactagctgggctacggttatctttgtcatcatc |
499 |
Q |
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| T |
37764593 |
agggttattaccacgattttctttatgttcagtagcatgactatgtttatctttgtcatcatc |
37764655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 38601928 - 38601699
Alignment:
| Q |
232 |
gaaagtacgtggtcgtgtatggcagattacgtacaaacaggcgacacgactcaggaacttatttcttaacttctggatttgataatttctcctcttcctc |
331 |
Q |
| |
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|||| |||||||||| |||||||||||| | |||||||| ||||||| ||||| |||| ||||||| ||||||||||||||||| | |||||||||| |
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| T |
38601928 |
gaaattacgtggtcgaatatggcagattaaggacaaacagtcgacacggctcagaaactcctttcttatattctggatttgataattgcccctcttcctc |
38601829 |
T |
|
| Q |
332 |
ggttgcagtcccttgagacttatcattggcaacatcctctccgaaagtatcttcttggccctctagatctaactcttgggcaccacttcctgggtttctt |
431 |
Q |
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|||||| || ||||||||||||||||||| ||||||| ||| | ||||| ||||||| | ||||||||||||||||| |||||||||| |||| ||||| |
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| T |
38601828 |
agttgcattcacttgagacttatcattggctacatcctttccaacagtattttcttggtcttctagatctaactcttgagcaccacttcttggggttctt |
38601729 |
T |
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| Q |
432 |
tcggaagggttattaccataattttcttca |
461 |
Q |
| |
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|| ||||||||||||| |||||||||| |
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| T |
38601728 |
tcaacagggttattaccacgattttcttca |
38601699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 38602141 - 38602054
Alignment:
| Q |
11 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
98 |
Q |
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| T |
38602141 |
gaacctgtgagacactgccaaactgactgaaatgctcttccagttcctcctcactgcaacagaataacaataaaaatataaaaccaac |
38602054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 37742995 - 37743079
Alignment:
| Q |
14 |
cctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
98 |
Q |
| |
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| T |
37742995 |
cctgtgagacactgccaaactgactgaaatgctcttccaattcctcctcactgcaacagaataacaataaaaatataaaaccaac |
37743079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 37758427 - 37758514
Alignment:
| Q |
11 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
98 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
37758427 |
gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac |
37758514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 37764175 - 37764262
Alignment:
| Q |
11 |
gaacctgtgagacacttccaaactgactgaaatactcttccagttcctcctccctgcaacataataacaataaaatgataaaaccaac |
98 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
37764175 |
gaacctgtgagacactgccaaactgactgaaatgctcttcgagttcctcctcactgcaatggaataacaataaaaatataaaaccaac |
37764262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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