View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1794_low_4 (Length: 455)

Name: NF1794_low_4
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1794_low_4
NF1794_low_4
[»] chr8 (6 HSPs)
chr8 (13-436)||(8103616-8104059)
chr8 (257-336)||(43285904-43285983)
chr8 (284-347)||(4054255-4054318)
chr8 (257-336)||(6440132-6440211)
chr8 (244-351)||(38675639-38675746)
chr8 (226-324)||(10839393-10839491)
[»] chr5 (5 HSPs)
chr5 (234-365)||(28597102-28597233)
chr5 (245-326)||(33958189-33958270)
chr5 (257-341)||(21943637-21943721)
chr5 (226-314)||(27487959-27488047)
chr5 (242-294)||(27546158-27546210)
[»] chr3 (8 HSPs)
chr3 (230-373)||(12762604-12762747)
chr3 (231-322)||(11630666-11630755)
chr3 (226-322)||(34627792-34627888)
chr3 (297-351)||(1796027-1796081)
chr3 (302-336)||(26550288-26550322)
chr3 (230-288)||(34532287-34532345)
chr3 (302-347)||(9692765-9692810)
chr3 (245-322)||(54099286-54099363)
[»] chr7 (9 HSPs)
chr7 (244-339)||(26018088-26018183)
chr7 (302-343)||(46578122-46578163)
chr7 (307-351)||(20337346-20337390)
chr7 (257-336)||(4292478-4292557)
chr7 (257-343)||(47012511-47012597)
chr7 (245-326)||(41018724-41018805)
chr7 (265-365)||(237034-237134)
chr7 (231-315)||(39497217-39497301)
chr7 (284-336)||(41989711-41989763)
[»] chr1 (4 HSPs)
chr1 (257-351)||(14092993-14093087)
chr1 (302-347)||(40861247-40861292)
chr1 (257-349)||(37516562-37516652)
chr1 (231-291)||(1863088-1863148)
[»] chr4 (5 HSPs)
chr4 (257-336)||(37060368-37060445)
chr4 (257-347)||(31574881-31574971)
chr4 (231-293)||(49818885-49818947)
chr4 (232-315)||(21172351-21172434)
chr4 (236-280)||(28417572-28417616)
[»] chr2 (3 HSPs)
chr2 (239-343)||(44977423-44977527)
chr2 (236-340)||(13711287-13711391)
chr2 (303-347)||(16447234-16447278)
[»] chr6 (2 HSPs)
chr6 (257-351)||(4922670-4922764)
chr6 (302-340)||(5522624-5522662)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 8103616 - 8104059
Alignment:
Q  13 aatatagctgttgtaattatattttagaaaatgttatcgtgcacgacaaatctaacgtcaaatttgtacgtataatgatgaccccatttttgtttggtcg 112  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||     
T  8103616 aatagagctgttgtaattatattttagaaaatgctatcgtgcacgataaatctatcgtcaaatttgtacgtataaagatgaccccatttttgtttggtcc 8103715  T
Q  113 gtgtcttctcccaactctctatcattctctcttctcctctcccaaaa--------tcaattattttctaaacagtatttacagaaagaggtgtgttattt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||    
T  8103716 gtgtcttctcccaactctctatcattctctcttctcctctcccaaaatcaaaaaatcaattattttctaaacagtatttatagaaagaggtgtgttattt 8103815  T
Q  205 gaacaacaaaaaatcaattctttttcatgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggag 304  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  8103816 gaacaacaaaaaatcaattcttttccatgataatttatgagacaaacataagtttacaaagaaaaataaatattgatataaaaatcaaagcgataaggag 8103915  T
Q  305 agaaagtaaaattataatgtgaagatgagagataaaattatcat------------aaattgatggtagaaattgtcatttttgtttggaatgcagtcgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||| ||||||||||||    
T  8103916 agaaagtaaaattataatgtgaagatgagagataaaattatcataaaaattatcacaaattgatagtagaaattgtcatttttgtttagaatgcagtcgt 8104015  T
Q  393 catgtatgatggggcgtggaaccgtgaatagttggagttgtgtt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8104016 catgtatgatggggcgtggaaccgtgaatagttggagttgtgtt 8104059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 43285904 - 43285983
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagaga 336  Q
    |||| |||||||| ||  ||||||||||||||||||||  |||| |||||||||||||| ||||||||||  ||||||||    
T  43285904 tttagaaagaaaaatatgtattgatataaaaaccaaagcaataaagagagaaagtaaaaatataatgtgagtatgagaga 43285983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 4054255 - 4054318
Alignment:
Q  284 aaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatca 347  Q
    |||||||||||  |||| ||||||||||||||  |||||||||| |||| ||||||| ||||||    
T  4054255 aaaaaccaaagcaataaagagagaaagtaaaaagataatgtgaatatgaaagataaagttatca 4054318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 6440211 - 6440132
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagaga 336  Q
    ||||||||||||||||  |||||| | ||||| |||||  | || |||||||||||||| ||||||||||  ||||||||    
T  6440211 tttacaaagaaaagtatgtattgacacaaaaatcaaagcaagaaagagagaaagtaaaaatataatgtgagtatgagaga 6440132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 351
Target Start/End: Complemental strand, 38675746 - 38675639
Alignment:
Q  244 agacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaatt 343  Q
    |||||| ||||| |||| |||||||||||  |||||  | |||||||||||  |||  |||||||||||||| |||||||||   |||||||| ||| ||    
T  38675746 agacaaccataactttaaaaagaaaagtatgtattggcacaaaaaccaaagaaatagagagagaaagtaaaaatataatgtgggtatgagagagaaagtt 38675647  T
Q  344 atcataaa 351  Q
     |||||||    
T  38675646 gtcataaa 38675639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 10839393 - 10839491
Alignment:
Q  226 ttttcatgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgt 324  Q
    |||| |||||||||| ||||||||  | || ||||||||||||| |||||||||  | |||||||||||  |||   |||||||||||||  |||||||    
T  10839393 tttttatgataatttttgagacaactaaaattttacaaagaaaattaaatattggcacaaaaaccaaagcaatagatagagaaagtaaaaacataatgt 10839491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 365
Target Start/End: Original strand, 28597102 - 28597233
Alignment:
Q  234 ataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgag 333  Q
    ||||||||||| |||| ||||| |||| |||||||||||||||||||||  |||| ||||   |||  |||| ||| |||||  ||||| | || |||||    
T  28597102 ataatttatgaaacaaccataaatttataaagaaaagtaaatattgatacgaaaatcaaaataatatagagaaaaaataaaaacataatataaatatgag 28597201  T
Q  334 agataaaattatcataaattgatggtagaaat 365  Q
    |||||||||| | |||||||||| ||| ||||    
T  28597202 agataaaattgtgataaattgattgtataaat 28597233  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 33958189 - 33958270
Alignment:
Q  245 gacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtga 326  Q
    ||||| ||||| |||||||||||||  | ||||||| | |||||||||||  |||  |||||||||||||| ||||||||||    
T  33958189 gacaaccataaatttacaaagaaaaagagatattgacacaaaaaccaaagcaatagagagagaaagtaaaaatataatgtga 33958270  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 21943637 - 21943721
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaa 341  Q
    |||||||||||||  | ||||||| | ||||| |||||  |||| |||||||| |||||  |||||||||| |||||||| ||||    
T  21943637 tttacaaagaaaataagatattgacagaaaaatcaaagcaataaagagagaaaataaaaacataatgtgaatatgagagagaaaa 21943721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 27488047 - 27487959
Alignment:
Q  226 ttttcatgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaa 314  Q
    |||| |||||||||| ||||| ||  | || ||||||||||||| |||||||||  | |||||||||||  |||  |||||||||||||    
T  27488047 tttttatgataatttttgagataactaaaattttacaaagaaaattaaatattggcacaaaaaccaaagcaatagagagagaaagtaaa 27487959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 27546210 - 27546158
Alignment:
Q  242 tgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaag 294  Q
    |||||||||||||| | ||||||||||| || ||||||| ||||||| |||||    
T  27546210 tgagacaatcataaatgtacaaagaaaaatagatattgacataaaaatcaaag 27546158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 12762604 - 12762747
Alignment:
Q  230 catgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaaga 329  Q
    ||||| |||||||| ||||| ||||| ||||||||||||| ||  |||||| | ||||| |||||  |||| |||||||| ||||| |||| |||||  |    
T  12762604 catgacaatttatgggacaaccataaatttacaaagaaaaatagttattgacacaaaaatcaaagtaataaagagagaaaataaaaatatattgtgagaa 12762703  T
Q  330 tgagagataaaattatcataaattgatggtagaaattgtcattt 373  Q
    ||||| | |||||| ||| |||||||| ||| ||| | ||||||    
T  12762704 tgagaaagaaaattgtcacaaattgattgtacaaaatatcattt 12762747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 11630666 - 11630755
Alignment:
Q  231 atgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataat 322  Q
    |||| ||||| ||||||||| | || |||||||||||||  || ||||||||||||||||||||  |||  |||||||||||||| ||||||    
T  11630666 atgacaatttttgagacaattaaaattttacaaagaaaatgaagtattgatataaaaaccaaagtaata--gagagaaagtaaaaatataat 11630755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 34627792 - 34627888
Alignment:
Q  226 ttttcatgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataat 322  Q
    |||| ||||||| |||| |||||| ||||| |||||||||||||  | ||||| ||| ||||| |||||   ||| |||||||||||||| ||||||    
T  34627792 tttttatgataacttataagacaaccataaatttacaaagaaaataagatatttatacaaaaatcaaagcagtaaagagagaaagtaaaaatataat 34627888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 1796027 - 1796081
Alignment:
Q  297 ataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaa 351  Q
    |||| ||||||| ||||||  |||||||||| |||||||| ||||||||||||||    
T  1796027 ataaagagagaatgtaaaaacataatgtgaacatgagagagaaaattatcataaa 1796081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 26550322 - 26550288
Alignment:
Q  302 gagagaaagtaaaattataatgtgaagatgagaga 336  Q
    |||||||||||||||||||||||||| ||||||||    
T  26550322 gagagaaagtaaaattataatgtgaatatgagaga 26550288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 34532345 - 34532287
Alignment:
Q  230 catgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaa 288  Q
    |||||||||||||| ||||| ||||  |||||||||||||||| | ||||||| |||||    
T  34532345 catgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaa 34532287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 9692810 - 9692765
Alignment:
Q  302 gagagaaagtaaaattataatgtgaagatgagagataaaattatca 347  Q
    ||||||||||||||| |||||||||| |||||||| ||| ||||||    
T  9692810 gagagaaagtaaaatgataatgtgaatatgagagagaaagttatca 9692765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 54099286 - 54099363
Alignment:
Q  245 gacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataat 322  Q
    ||||||||||  |||||||||||||||| || |||  ||||||| |||||  |||  |||||||||||||| ||||||    
T  54099286 gacaatcatatttttacaaagaaaagtatatgttggcataaaaatcaaagcaatagagagagaaagtaaaaatataat 54099363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 26018183 - 26018088
Alignment:
Q  244 agacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataa 339  Q
    |||||||||||  |||| |||||||||||  ||||  ||||||||  ||||  |||  |||||||||||||| ||||||||||| |||||||||||    
T  26018183 agacaatcatatttttataaagaaaagtatgtatttgtataaaaattaaagtaatagagagagaaagtaaaaatataatgtgaatatgagagataa 26018088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 46578122 - 46578163
Alignment:
Q  302 gagagaaagtaaaattataatgtgaagatgagagataaaatt 343  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  46578122 gagagaaagtaaaatgataatgtgaatatgagagataaaatt 46578163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 20337390 - 20337346
Alignment:
Q  307 aaagtaaaattataatgtgaagatgagagataaaattatcataaa 351  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  20337390 aaagtaaaaatataatgtgaatatgagagagaaaattatcataaa 20337346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 4292557 - 4292478
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagaga 336  Q
    ||||||||||||| ||||||||| || ||||| |||||  |||  ||||||||||||||  |||||||||  ||||||||    
T  4292557 tttacaaagaaaattaaatattggtacaaaaatcaaagcaatagagagagaaagtaaaaacataatgtgagtatgagaga 4292478  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 47012511 - 47012597
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaatt 343  Q
    |||||||||||||||| || ||| || ||||| ||||   ||||  | ||||| ||||| ||||||||||| |||||||||||||||    
T  47012511 tttacaaagaaaagtatatgttggtacaaaaatcaaaacaataaaaaaagaaaataaaaatataatgtgaatatgagagataaaatt 47012597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 41018805 - 41018724
Alignment:
Q  245 gacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtga 326  Q
    ||||||||||| |||||||||||||  |  |||| | | |||||||||||  |||  |||||||||||||| ||||||||||    
T  41018805 gacaatcataaatttacaaagaaaaagaggtattaacacaaaaaccaaagtaatagagagagaaagtaaaaatataatgtga 41018724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 365
Target Start/End: Complemental strand, 237134 - 237034
Alignment:
Q  265 gaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaattgatggtagaaa 364  Q
    |||||||| |||||| ||  ||||||||||  |||  ||||  |||||||| ||||||||||  |||||||||||| || ||| |||||||| ||| |||    
T  237134 gaaaagtatatattggtacgaaaaccaaagcaatagtgagattaagtaaaagtataatgtgagtatgagagataaagttgtcacaaattgattgtacaaa 237035  T
Q  365 t 365  Q
    |    
T  237034 t 237034  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 39497217 - 39497301
Alignment:
Q  231 atgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaa 315  Q
    ||||||| |||| |||||| ||| | | |||||||||||  ||||| || || |||||||||||  |||| ||||||||||||||    
T  39497217 atgataacttataagacaaccattaatgtacaaagaaaatgaaataatggtacaaaaaccaaagcaataaagagagaaagtaaaa 39497301  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 41989711 - 41989763
Alignment:
Q  284 aaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagaga 336  Q
    |||||||||||  |||| |||||||||||||| ||||||||||  ||||||||    
T  41989711 aaaaaccaaagcaataaagagagaaagtaaaaatataatgtgagtatgagaga 41989763  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 14093087 - 14092993
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaa 351  Q
    ||||||||||||| |||||| ||| ||| |||| ||||  |||  | |||||||| |||  |||||||||| |||| ||||||||||||||||||    
T  14093087 tttacaaagaaaaataaatagtgacatagaaactaaagtaatagagtgagaaagttaaaaaataatgtgaatatgaaagataaaattatcataaa 14092993  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 40861247 - 40861292
Alignment:
Q  302 gagagaaagtaaaattataatgtgaagatgagagataaaattatca 347  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||    
T  40861247 gagagaaagtaaaaagataatgtgaatatgagagataaaattatca 40861292  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 37516652 - 37516562
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcata 349  Q
    ||||||||| |||||| ||| ||| || ||||||||||  |||  |||||||||||| |  |||||||||  ||||||||||||||| |||||    
T  37516652 tttacaaaggaaagtagatagtgacatgaaaaccaaagcaata--gagagaaagtaacaaaataatgtgagtatgagagataaaattgtcata 37516562  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 1863148 - 1863088
Alignment:
Q  231 atgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaacca 291  Q
    ||||||| |||||| |||| ||||| |||| ||||||||||| ||||| ||| ||||||||    
T  1863148 atgataacttatgaaacaaccataaatttataaagaaaagtagatattaatacaaaaacca 1863088  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 37060445 - 37060368
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagaga 336  Q
    ||||||||||||| | |||||||| |||| ||||||||  |||  ||||||| |||||| ||||||||||| ||||||||    
T  37060445 tttacaaagaaaaatgaatattgacataagaaccaaagcaata--gagagaaggtaaaaatataatgtgaatatgagaga 37060368  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 31574881 - 31574971
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatca 347  Q
    |||||||||||||  |  |||||||| ||||| |||||  |||  |||||||| ||||| ||||||||||  |||||||| ||||||||||    
T  31574881 tttacaaagaaaatcatgtattgatacaaaaatcaaagcaatagagagagaaaataaaaatataatgtgagtatgagagagaaaattatca 31574971  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 49818947 - 49818885
Alignment:
Q  231 atgataatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaa 293  Q
    ||||||||||||  |||| |||||  |||| ||||||||||||||||||| || |||||||||    
T  49818947 atgataatttataggacagtcatagatttataaagaaaagtaaatattgacatgaaaaccaaa 49818885  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 21172434 - 21172351
Alignment:
Q  232 tgataatttatgagacaatcataagtttacaaag-aaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaa 315  Q
    |||||||||||| || |||||||| ||||||||| ||||||| |||||||||  |||||||||   |||| |||| |||||||||    
T  21172434 tgataatttatgggataatcataa-tttacaaagaaaaagtagatattgatacgaaaaccaaaacaataaagagataaagtaaaa 21172351  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 28417572 - 28417616
Alignment:
Q  236 aatttatgagacaatcataagtttacaaagaaaagtaaatattga 280  Q
    |||||||  ||||||||||| ||||||||||||||||| ||||||    
T  28417572 aatttattggacaatcataattttacaaagaaaagtaattattga 28417616  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 44977423 - 44977527
Alignment:
Q  239 ttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagata 338  Q
    ||||||||||| ||||| |||||||||||||     |||||| | |||||||||||  |||  ||||||||||||||  ||||||| || |||||||| |    
T  44977423 ttatgagacaaccataaatttacaaagaaaatggggtattgacacaaaaaccaaagcaatagagagagaaagtaaaaacataatgtaaatatgagagaga 44977522  T
Q  339 aaatt 343  Q
    |||||    
T  44977523 aaatt 44977527  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 13711287 - 13711391
Alignment:
Q  236 aatttatgagacaatcataagtttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagag 335  Q
    ||||| || ||||||||  | ||||||||| |||||| ||| ||| |   |||||||||  |||  ||||||||||||||  |||||||||| |||||||    
T  13711287 aatttttgtgacaatcactaatttacaaaggaaagtagatagtgacacggaaaccaaagtaatagagagagaaagtaaaaaaataatgtgaatatgagag 13711386  T
Q  336 ataaa 340  Q
    |||||    
T  13711387 ataaa 13711391  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 16447234 - 16447278
Alignment:
Q  303 agagaaagtaaaattataatgtgaagatgagagataaaattatca 347  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  16447234 agagaaaataaaaatataatgtgaatatgagagagaaaattatca 16447278  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 351
Target Start/End: Original strand, 4922670 - 4922764
Alignment:
Q  257 tttacaaagaaaagtaaatattgatataaaaaccaaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaa 351  Q
    ||||||||| ||||||  || |||||||||||| |||   |||| ||||||||||||||  ||||| |||| |||| ||||||| || |||||||    
T  4922670 tttacaaaggaaagtaggtactgatataaaaactaaaataataaagagagaaagtaaaaaaataatatgaatatgaaagataaagttgtcataaa 4922764  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 5522624 - 5522662
Alignment:
Q  302 gagagaaagtaaaattataatgtgaagatgagagataaa 340  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  5522624 gagagaaagtaaaagtataatgtgaatatgagagataaa 5522662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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