View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1794_low_5 (Length: 453)
Name: NF1794_low_5
Description: NF1794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1794_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 25176605 - 25176177
Alignment:
| Q |
18 |
atgaggttgatgagttccaagaagattacaaaactgggatttttcgttttgatattaagatttattttagtataaggtttaggcttggagattttatatt |
117 |
Q |
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| T |
25176605 |
atgaggttgatgagtttcaagaagattacaaaaatggtatttttggtattgatattaagatttattttagtataaggtttaggcttggaaattttatatt |
25176506 |
T |
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| Q |
118 |
tggtgacaccaaagtccaagcaaaatgtgattttaaggttcctattagttctaataatagtgggaaaatggttgatccgtttgatcccaccaagtgtgtg |
217 |
Q |
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| T |
25176505 |
tggtgacaccaaagtccaagcaaaatgtgatctaaaggttcctcttagttctaataatagtgggaaaatggttgatccgtttgatcccaccaagtgtgtg |
25176406 |
T |
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| Q |
218 |
gtggatttctgattcgcattataggtactactactaccatgttattaatttctaagcttgtatcacgttaatttgattgatttaatttgtatacatgttc |
317 |
Q |
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| T |
25176405 |
gtggatttctgattcgcattataggtactactactaccatgttattaatttctaagcttgtatcacgttaatttgattgatttaatttgtatacatgttc |
25176306 |
T |
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| Q |
318 |
aaaaatctaagattaatgttgtttagtacgatgaccattttaacgaagattaatgttgtttagtattactcatttatccatcacacatcgtttctatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25176305 |
aaaaatctaagattaatgttgtttagtacgataaccattttaacgaagattaatgttgtttagtattactcatttatccatcacacatcgtttctatatt |
25176206 |
T |
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| Q |
418 |
atccttgtatggcaagtggtcttcatctc |
446 |
Q |
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| T |
25176205 |
atccttgtatggcaagtggttttcttctc |
25176177 |
T |
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