View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17950_high_1 (Length: 706)

Name: NF17950_high_1
Description: NF17950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17950_high_1
NF17950_high_1
[»] chr3 (12 HSPs)
chr3 (451-700)||(34705601-34705851)
chr3 (124-302)||(52125939-52126118)
chr3 (67-298)||(18319916-18320167)
chr3 (67-298)||(46920418-46920669)
chr3 (67-298)||(11031254-11031505)
chr3 (298-453)||(46920713-46920870)
chr3 (298-455)||(11031051-11031210)
chr3 (298-452)||(18320211-18320367)
chr3 (312-450)||(52125745-52125886)
chr3 (396-455)||(37609250-37609309)
chr3 (394-451)||(8082496-8082553)
chr3 (16-60)||(52126190-52126234)
[»] chr4 (12 HSPs)
chr4 (67-298)||(34967421-34967653)
chr4 (67-266)||(27742400-27742600)
chr4 (67-298)||(54207548-54207799)
chr4 (67-298)||(9117755-9118006)
chr4 (298-453)||(54207843-54208000)
chr4 (298-448)||(9118050-9118202)
chr4 (298-452)||(27742168-27742327)
chr4 (298-451)||(34967697-34967851)
chr4 (16-60)||(34967326-34967370)
chr4 (15-60)||(27742651-27742696)
chr4 (393-450)||(30199956-30200013)
chr4 (394-454)||(26695821-26695881)
[»] chr1 (5 HSPs)
chr1 (124-302)||(51083719-51083898)
chr1 (67-298)||(38007311-38007562)
chr1 (298-453)||(38007606-38007763)
chr1 (312-451)||(51083951-51084092)
chr1 (394-450)||(14236398-14236454)
[»] chr8 (13 HSPs)
chr8 (67-298)||(3428791-3429042)
chr8 (67-298)||(11465894-11466145)
chr8 (298-450)||(11466189-11466343)
chr8 (298-449)||(3429086-3429239)
chr8 (363-428)||(6228067-6228132)
chr8 (418-452)||(6227960-6227994)
chr8 (394-451)||(38526483-38526540)
chr8 (394-454)||(38567668-38567728)
chr8 (393-451)||(20267449-20267507)
chr8 (393-451)||(21054078-21054136)
chr8 (394-451)||(9686364-9686421)
chr8 (393-462)||(18167144-18167213)
chr8 (393-462)||(18630698-18630767)
[»] chr7 (8 HSPs)
chr7 (154-298)||(16849577-16849721)
chr7 (124-233)||(31738560-31738669)
chr7 (216-302)||(31738460-31738547)
chr7 (298-450)||(16849393-16849533)
chr7 (372-457)||(31738260-31738345)
chr7 (67-157)||(16849736-16849823)
chr7 (16-60)||(31738741-31738785)
chr7 (394-451)||(31293022-31293079)
[»] chr2 (2 HSPs)
chr2 (394-453)||(15805905-15805964)
chr2 (318-354)||(16627317-16627353)
[»] chr5 (2 HSPs)
chr5 (394-451)||(25898072-25898129)
chr5 (394-450)||(22213266-22213322)
[»] chr6 (1 HSPs)
chr6 (394-454)||(4653571-4653631)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 451 - 700
Target Start/End: Original strand, 34705601 - 34705851
Alignment:
Q  451 taagtttatgaagtcattacggctccatcacggtttgttataacataagaagaggctctaggatgacatggaaggaatgatggctacattttggcgatga 550  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34705601 taagtttatgaagtcattacggccccatcacggtttgttacaacataagaagaggctctaagatgacatggaaggaatgatggctacattttggcgatga 34705700  T
Q  551 aacnnnnnnnnn-aagaaaggttttgaaacttgtttggagagctcaatgaaaataattatttcaagtgttgcttgttttttatcgagtcttcgtgaatat 649  Q
    |||          ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705701 aacttttttttttaagaaaggttttgaaacttatttggagagctcaatgaaaataattatttcaagtgttgcttgttttttatcgagtcttcgtgaatat 34705800  T
Q  650 atgctaataaattggatcaatttattgttggtattgtttgtatattcttcg 700  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  34705801 atgctaataagttggatcaatttattgttggtattgtttgtattttcttcg 34705851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 52126118 - 52125939
Alignment:
Q  124 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 223  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52126118 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 52126019  T
Q  224 atgagaataaaatatagt-aaaataaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 302  Q
    || |||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  52126018 atcagaataaaatattgtaaaaataaattcaaattgatttagaaacagggtaggggtatttttgtaactgtatcatattt 52125939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 18319916 - 18320167
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 157  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  18319916 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaacatatttatgtgtctattcaagttttcaacaatattgttctattatatcaa 18320015  T
Q  158 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  18320016 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 18320115  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18320116 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 18320167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 46920418 - 46920669
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 157  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  46920418 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattataacaa 46920517  T
Q  158 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  46920518 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 46920617  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920618 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 46920669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 67 - 298
Target Start/End: Complemental strand, 11031505 - 11031254
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 164  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||||    
T  11031505 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 11031406  T
Q  165 tcaactatat------------------gaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
    ||||||||||                  |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  11031405 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 11031306  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031305 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 11031254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 46920713 - 46920870
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  46920713 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 46920812  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 453  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920813 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 46920870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 298 - 455
Target Start/End: Complemental strand, 11031210 - 11031051
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  11031210 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 11031111  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagt 455  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  11031110 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgtctcctaagt 11031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 298 - 452
Target Start/End: Original strand, 18320211 - 18320367
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  18320211 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 18320310  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccccta 452  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  18320311 tcccaggtaagttattcctggaattaatttatgaattcctgaaacaaacgcccccta 18320367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 312 - 450
Target Start/End: Complemental strand, 52125886 - 52125745
Alignment:
Q  312 tttttgaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn---aaatacccaggaataaactttccactactttattcccgggtaagtt 408  Q
    |||||||||||||||||| | ||||| ||||||||||||||||           ||||| || ||||||||||| |||||||||||||||| ||||||||    
T  52125886 tttttgaaaatattcctgaggaattagaatactaaccaaacactttttttttcaaaatatccgggaataaacttcccactactttattcccaggtaagtt 52125787  T
Q  409 attcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
    ||||| | |||||||||||||||||  |||||||||||||||    
T  52125786 attcccgagattaatttatgaatcctcgaaacaaacgccccc 52125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 37609250 - 37609309
Alignment:
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagt 455  Q
    ||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||||||    
T  37609250 tcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaagt 37609309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 8082496 - 8082553
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  8082496 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 8082553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 52126234 - 52126190
Alignment:
Q  16 ttttcaactgccaattaatttctcaatacactgaacgtgttgatt 60  Q
    ||||||||||||||||||||| || || || ||||||||||||||    
T  52126234 ttttcaactgccaattaatttttccatgcaatgaacgtgttgatt 52126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 34967421 - 34967653
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 164  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||       |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34967421 atgtaatccatctattatttctttatgttttttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattctatcaa 34967520  T
Q  165 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattcaaattgatttag 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34967521 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagt-aaataaattcaaattgatttag 34967619  T
Q  265 aaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||| ||||||||||||    
T  34967620 aaacaaggtagaggtatttttataactgtatcat 34967653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 27742600 - 27742400
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 164  Q
    ||||||||||||| ||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  27742600 atgtaatccatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattctatcaa 27742501  T
Q  165 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattcaaattgatttag 264  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27742500 tcaaatatatgaaaacataattttattttatgatgtattttgaaatgcttcaagttataatgagaataaaatatagt-aaatagattcaaattgatttag 27742402  T
Q  265 aa 266  Q
    ||    
T  27742401 aa 27742400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 54207548 - 54207799
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 162  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  54207548 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 54207647  T
Q  163 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  54207648 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 54207747  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207748 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 54207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 9117755 - 9118006
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 162  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  9117755 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 9117854  T
Q  163 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  9117855 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 9117954  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9117955 aaattcaaattgatttagaaataaggtagaggtatttttgtaactgtatcat 9118006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 54207843 - 54208000
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  54207843 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaactttccactactttat 54207942  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 453  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207943 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 54208000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 298 - 448
Target Start/End: Original strand, 9118050 - 9118202
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    |||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  9118050 tatttatgagaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 9118149  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccc 448  Q
    |  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9118150 tttcaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccc 9118202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 298 - 452
Target Start/End: Complemental strand, 27742327 - 27742168
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn----aaatacccaggaataaactttccactactt 392  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||            |||||||||  ||||||||| |||||||||    
T  27742327 tatttatgggaacatttttcgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttttaaaaatacccataaataaacttcccactactt 27742228  T
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccccta 452  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27742227 tattcccaggtaagttattcctggaattaatttatgaatccctgaaacaaacgcccccta 27742168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 298 - 451
Target Start/End: Original strand, 34967697 - 34967851
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         ||| |||||| |||||||||| ||||||||||||    
T  34967697 tatttatgggaacattttttgaaaatattcctgggaaattaaaatactaaccaaacatttttttttaaaatacccatgaataaacttcccactactttat 34967796  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||| || |||||||||||||| |||||||||||||||  |||||||||||||||||    
T  34967797 tccagg-taagttattcctggaattaatttatgaatctatgaaacaaacgccccct 34967851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 34967326 - 34967370
Alignment:
Q  16 ttttcaactgccaattaatttctcaatacactgaacgtgttgatt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34967326 ttttcaactgccaattaatttctcaatacactgaacgtgttgatt 34967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 27742696 - 27742651
Alignment:
Q  15 attttcaactgccaattaatttctcaatacactgaacgtgttgatt 60  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  27742696 attttcaactaccaattaatttctcaatacactgaacgtgttgatt 27742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 30200013 - 30199956
Alignment:
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
    |||||| ||| |||||||||| |||| |||||| || |||| ||||||||||||||||    
T  30200013 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccc 30199956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 26695881 - 26695821
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaag 454  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  ||||||||| ||||||||    
T  26695881 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgtcccctaag 26695821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 6e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 124 - 302
Target Start/End: Original strand, 51083719 - 51083898
Alignment:
Q  124 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 223  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51083719 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 51083818  T
Q  224 atgagaataaaatatagt-aaaataaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 302  Q
    || ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  51083819 atcagaataaaatatagtaaaaataaattcaaattgatttaaaaacagggtaggggtatttttgtaactgtatcatattt 51083898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 38007311 - 38007562
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 162  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  38007311 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 38007410  T
Q  163 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  38007411 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 38007510  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007511 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 38007562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 38007606 - 38007763
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  38007606 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaactttccactactttat 38007705  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 453  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007706 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 38007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 451
Target Start/End: Original strand, 51083951 - 51084092
Alignment:
Q  312 tttttgaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn--aaatacccaggaataaactttccactactttattcccgggtaagtta 409  Q
    |||||||||||||||||| | ||||| ||||||||||||||||          ||||| |||||||||||||| ||||||||||||||||  ||||||||    
T  51083951 tttttgaaaatattcctgaggaattagaatactaaccaaacacttttttttcaaaatatccaggaataaacttcccactactttattcccatgtaagtta 51084050  T
Q  410 ttcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  51084051 ttcccgggattaatttatgaatccccgaaacaaacaccccct 51084092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 14236454 - 14236398
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  ||||||||||||||    
T  14236454 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccc 14236398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 3428791 - 3429042
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 157  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  3428791 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattataacaa 3428890  T
Q  158 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  3428891 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 3428990  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428991 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 3429042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 11465894 - 11466145
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 157  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  11465894 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattatatcaa 11465993  T
Q  158 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 246  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  11465994 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 11466093  T
Q  247 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11466094 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 11466145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 298 - 450
Target Start/End: Original strand, 11466189 - 11466343
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  11466189 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 11466288  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11466289 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 11466343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 298 - 449
Target Start/End: Original strand, 3429086 - 3429239
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  3429086 tatttatggaaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 3429185  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccc 449  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3429186 tcccaggtaaattattcctgggattaatttatgaatccctgaaacaaacgcccc 3429239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 6228067 - 6228132
Alignment:
Q  363 aaatacccaggaataaactttccactactttattcccgggtaagttattcctgggattaatttatg 428  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  6228067 aaatacccaggaataaactttccactactttattcacgggtaagttattcctaggattaatttatg 6228132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 6227994 - 6227960
Alignment:
Q  418 attaatttatgaatccctgaaacaaacgcccccta 452  Q
    |||||||||||||||||||||||||||||||||||    
T  6227994 attaatttatgaatccctgaaacaaacgcccccta 6227960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 38526540 - 38526483
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||||||||||| ||||||||||||| |||||||||  ||||  |||||||||||||||    
T  38526540 attcccgggtatgttattcctgggaataatttatgtttcccaaaaacaaacgccccct 38526483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 38567668 - 38567728
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaag 454  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  ||||||||||||||||||    
T  38567668 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaag 38567728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 20267449 - 20267507
Alignment:
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    |||||| ||| |||||||||| |||| |||||| || |||| |||||||||||||||||    
T  20267449 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccct 20267507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 21054078 - 21054136
Alignment:
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    |||||| ||| |||||||||| |||| |||||| || |||| |||||||||||||||||    
T  21054078 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccct 21054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 9686421 - 9686364
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  9686421 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 9686364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 18167144 - 18167213
Alignment:
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagtttatgaa 462  Q
    |||||| ||| | |||||||| |||| |||||| || |||| ||||||||||||| ||||||||| ||||    
T  18167144 tattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcctcctaagtttgtgaa 18167213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 18630698 - 18630767
Alignment:
Q  393 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagtttatgaa 462  Q
    |||||| ||| | |||||||| |||| |||||| || |||| ||||||||||||| ||||||||| ||||    
T  18630698 tattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcctcctaagtttgtgaa 18630767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 16849721 - 16849577
Alignment:
Q  154 tattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattca 253  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16849721 tattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaataaattca 16849622  T
Q  254 aattgatttagaaacaaggtagaggtatttttgtaactgtatcat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16849621 aattgatttagaaacaaggtagaggtatttttgtaactgtatcat 16849577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 31738669 - 31738560
Alignment:
Q  124 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 223  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31738669 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 31738570  T
Q  224 atgagaataa 233  Q
    || |||||||    
T  31738569 atcagaataa 31738560  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 31738547 - 31738460
Alignment:
Q  216 aagttataatgagaataaaatatagtaaaa-taaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 302  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  31738547 aagttataatcagaataaaatatagtaaaaataaattcaaattgatttagaaacagggtaggggtatttttgtaactgtatcatattt 31738460  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 298 - 450
Target Start/End: Complemental strand, 16849533 - 16849393
Alignment:
Q  298 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 395  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| |||             
T  16849533 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttccca--------- 16849443  T
Q  396 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16849442 -----ggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 16849393  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 31738345 - 31738260
Alignment:
Q  372 ggaataaactttccactactttattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagttt 457  Q
    ||||||||||| |||||||||||||||| | ||||||||| | |||||||||||||||||||| ||||||||||| |||| |||||    
T  31738345 ggaataaacttcccactactttattcccagataagttatttccgggattaatttatgaatccccgaaacaaacgctcccttagttt 31738260  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 16849823 - 16849736
Alignment:
Q  67 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntatttgtgtctattcaagttttcaacaatattgttctatt 157  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       ||||| ||| |   ||||||||||||||||||||||||||    
T  16849823 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgt---caagttttcaacaatattgttctatt 16849736  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31738785 - 31738741
Alignment:
Q  16 ttttcaactgccaattaatttctcaatacactgaacgtgttgatt 60  Q
    |||||||||||||||||||||||| || || ||||||||||||||    
T  31738785 ttttcaactgccaattaatttctccatgcaatgaacgtgttgatt 31738741  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 31293079 - 31293022
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  31293079 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 31293022  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 15805905 - 15805964
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 453  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||||    
T  15805905 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaa 15805964  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 16627317 - 16627353
Alignment:
Q  318 aaaatattcctgggaaattaaaatactaaccaaacac 354  Q
    |||||||||||||||||||||| |||| |||||||||    
T  16627317 aaaatattcctgggaaattaaattacttaccaaacac 16627353  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 25898072 - 25898129
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 451  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  25898072 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 25898129  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 22213322 - 22213266
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 450  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  ||||||||||||||    
T  22213322 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccc 22213266  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 4653631 - 4653571
Alignment:
Q  394 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaag 454  Q
    |||| |||||| ||||||||||||| |||||| ||  ||||  ||||||||||||||||||    
T  4653631 attctcgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaag 4653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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