View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17950_high_3 (Length: 402)
Name: NF17950_high_3
Description: NF17950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17950_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 15113036 - 15112940
Alignment:
| Q |
24 |
ctatacacgtgatttagtacattataggtataatcattaattttgaaaaccttgtggatataattctagagctccagcaataaatattgttacatct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15113036 |
ctatacacgtgatttagtacattataggtataatcattaattttgaaaaccttgtggatataattctagagctccagcaataaatatttttacatct |
15112940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 15112759 - 15112686
Alignment:
| Q |
218 |
cttctctctttgtttctacacctcagttccattctctttatgtgttttaatggctaaacctaatactaatgtcc |
291 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15112759 |
cttctctctttgtttctacacctcagccccattctctctatgtgttttaatggctaaacctaatactaatgtcc |
15112686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University