View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17950_high_4 (Length: 390)
Name: NF17950_high_4
Description: NF17950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17950_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 12725460 - 12725827
Alignment:
| Q |
1 |
ttatacttgttttgagttggaaagcatatattggacgaaagatgtttttatttgatgcctctttttcaatcacttgactaagtgtcattgatgaaagtga |
100 |
Q |
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| T |
12725460 |
ttatacttgttttgagttggaaagcatatattggacgaaagatgtttttatttgatgcctctttttcaatcacttgactaagtgtcattga---aagtga |
12725556 |
T |
|
| Q |
101 |
ttcccaattattaattgtgtgtgttgtaagtgattcccttataacatatatcattcgtatatttagctttatcccattttgccttcaagtaatccacaaa |
200 |
Q |
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| T |
12725557 |
ttcccaattattaattgtgtgtgttgtaagtgattcccttataacatatatcattcgtatatttagctttatcccattttgccttcaagtaatccacaaa |
12725656 |
T |
|
| Q |
201 |
ccacaatgcacaaaggnnnnnnngatgcatattctctagctttaagacttttagcagctcttaaaacttttgcaacatattttgtttggtgaaaattcca |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12725657 |
ccacaatgcacaaaggaaaaaaagatgcatattctctagctttaagacttttagcagctcttaaaacttttgcaacatattttgtttggtgaaaattcca |
12725756 |
T |
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| Q |
301 |
ccatgcaaatagtttaatttcattatgtaattatgttgtcacttttgttgaaaatagtagaaccacacaaa |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12725757 |
ccatgcaaatagtttaatttcattatgtaattatgttgtcacttttgttgaatatagtagaaccacacaaa |
12725827 |
T |
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