View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17950_low_2 (Length: 410)
Name: NF17950_low_2
Description: NF17950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17950_low_2 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 23 - 399
Target Start/End: Original strand, 27371769 - 27372152
Alignment:
| Q |
23 |
gggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27371769 |
gggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctat |
27371868 |
T |
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| Q |
123 |
tgactgtgtagttgcctctgttattatcacattcaaataaggctttggcttgggatacaattatgacaataagacaacaaacaaagggaaacaaagccat |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
27371869 |
tgactgtgtagtttcctctgttattatcacattcaaatatggctttggcttgggatacaattatgacaataagacaacaaacaaagggatacagagccat |
27371968 |
T |
|
| Q |
223 |
tacaaaattttatttgaagtatggacgtgaaattaaagggtagttgggtctactatgtaaatttgtaaaggtgt---ggtgttagagtacttttgagttg |
319 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
27371969 |
tacaaaattttgtttgaagtatggacgtgaaattaaagggtaggtgggtgtactaggtaaatttgtaaaggtgatgaggtgttaga---cttttgagttg |
27372065 |
T |
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| Q |
320 |
aatgaccataaacttttactactattcctaatttgatgt-------tgttgatttcttcaaatttcaaaataaaataacattatatt |
399 |
Q |
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| T |
27372066 |
actgaccataaacttttactactattcctaatttggtgttgttgaatgttgatttcttcaaatttcaaaataaaataacatgatatt |
27372152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 47764601 - 47764470
Alignment:
| Q |
23 |
gggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctat |
122 |
Q |
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|||| ||||||||||||||||||||| ||||| || || | |||| | |||||||| |||||| | | |||||||||||||||||||||||||||||||| |
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| T |
47764601 |
gggtcttggccatatgagaaattgtagaaaccataattgacttctttatgggaagaaaaactggaaaaaagggttttaaggttgttgtcgtaggtgctat |
47764502 |
T |
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| Q |
123 |
tgactgtgtagttgcctctgttattatcacat |
154 |
Q |
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| T |
47764501 |
tggctgtgtaattgcctctgttgttatcacat |
47764470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 47772983 - 47772860
Alignment:
| Q |
31 |
gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg |
130 |
Q |
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| T |
47772983 |
gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattggatgtg |
47772884 |
T |
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| Q |
131 |
tagttgcctctgttattatcacat |
154 |
Q |
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| T |
47772883 |
tagttgcctatgttgttatcacat |
47772860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 47745965 - 47746084
Alignment:
| Q |
19 |
atcagggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtg |
118 |
Q |
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||||| || ||||||||| ||||||||||| ||||||||||| |||| |||| ||||| || | || ||| |||||| || |||||||| | |||||| |
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| T |
47745965 |
atcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtg |
47746064 |
T |
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| Q |
119 |
ctattgactgtgtagttgcc |
138 |
Q |
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|||||| ||||||||||||| |
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| T |
47746065 |
ctattggctgtgtagttgcc |
47746084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 47713391 - 47713501
Alignment:
| Q |
28 |
ttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgact |
127 |
Q |
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||||||||| ||||||||||| ||||||||||| |||| |||| ||||| || | || ||| |||||| || |||||||| | |||||||||||| || |
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| T |
47713391 |
ttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggct |
47713490 |
T |
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| Q |
128 |
gtgtagttgcc |
138 |
Q |
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||||||||||| |
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| T |
47713491 |
gtgtagttgcc |
47713501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 47718185 - 47718295
Alignment:
| Q |
28 |
ttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgact |
127 |
Q |
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||||||||| ||||||||||| ||||||||||| |||||||||| ||||| | | || | | |||||| | |||||||| | |||||||||||| || |
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| T |
47718185 |
ttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggct |
47718284 |
T |
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| Q |
128 |
gtgtagttgcc |
138 |
Q |
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||||||||||| |
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| T |
47718285 |
gtgtagttgcc |
47718295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 6507109 - 6507213
Alignment:
| Q |
31 |
gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg |
130 |
Q |
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|||||| ||| |||| || |||||||||||||| ||| ||| ||||| || | || ||||||||||||| ||||| ||| ||||||||| ||| |||| |
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| T |
6507109 |
gccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtg |
6507208 |
T |
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| Q |
131 |
tagtt |
135 |
Q |
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||||| |
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| T |
6507209 |
tagtt |
6507213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 6500280 - 6500390
Alignment:
| Q |
31 |
gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg |
130 |
Q |
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||||| ||| |||||||| ||||||||||| |||||||||| ||||| || | | ||| ||| || || ||||| ||||| ||||||||||| |||| |
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| T |
6500280 |
gccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcataggtgctatttgttgtg |
6500379 |
T |
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| Q |
131 |
tagttgcctct |
141 |
Q |
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||||| ||||| |
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| T |
6500380 |
tagttacctct |
6500390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 1134 - 1238
Alignment:
| Q |
31 |
gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg |
130 |
Q |
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|||||| ||| |||| || |||||||||||||| ||| ||| ||||| || | || ||||||||||||| ||||| ||| ||||||||| ||| |||| |
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| T |
1134 |
gccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtg |
1233 |
T |
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| Q |
131 |
tagtt |
135 |
Q |
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||||| |
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| T |
1234 |
tagtt |
1238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 8788 - 8892
Alignment:
| Q |
31 |
gccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattgactgtg |
130 |
Q |
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|||||| ||| |||| || |||||||||||||| ||| ||| ||||| || | || ||||||||||||| ||||| ||| ||||||||| ||| |||| |
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| T |
8788 |
gccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtg |
8887 |
T |
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| Q |
131 |
tagtt |
135 |
Q |
| |
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||||| |
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| T |
8888 |
tagtt |
8892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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