View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17951_high_1 (Length: 347)
Name: NF17951_high_1
Description: NF17951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17951_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 44 - 347
Target Start/End: Complemental strand, 9858172 - 9857869
Alignment:
| Q |
44 |
aaaccttaataaaacagtgtagtttttgtggtttttctgaaaaaccagaatgaataaaacattacaaatcaagtaggcaattgaaacctacacaaagggc |
143 |
Q |
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| T |
9858172 |
aaaccttaataaaacgttgtagtttttgtggtttttctgaaaaaccagaatgaaaaaaacattacaaatcaagtaggcaattgaaacctacacaaagggc |
9858073 |
T |
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| Q |
144 |
atgaattgcctatcaccaaccaatcagagatacaagtcatatgaaacatgtgtgaacatggtattctaacaccaacattaaaatcttcaaaacaaatagc |
243 |
Q |
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| T |
9858072 |
atgaattgcctatcaccaaccaatcacagatacaagtcatatgaaacatgtgtgaacatggtattctaacaccaacattaaaatcttcaaaacaaatagc |
9857973 |
T |
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| Q |
244 |
acatttctctacttcttcaacttctaccatcttcaatccctcaataaatgacttagccgctggaacgaaccgattatctacttcttcaacctccatttcc |
343 |
Q |
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| T |
9857972 |
acatttctctacttcttcaacttctaccatcttcaatccctcaataaatgacttagccgctggaacgaaccgattatctacttcttcaacctccatttcc |
9857873 |
T |
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| Q |
344 |
tctt |
347 |
Q |
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|||| |
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| T |
9857872 |
tctt |
9857869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 9862967 - 9862916
Alignment:
| Q |
198 |
aacatggtattctaacaccaacattaaaatcttcaaaacaaatagcacattt |
249 |
Q |
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| T |
9862967 |
aacatggcatactaagacaaactttaaaatcttcaaaacaaatagcacattt |
9862916 |
T |
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