View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17951_low_2 (Length: 340)
Name: NF17951_low_2
Description: NF17951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17951_low_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 10050155 - 10050455
Alignment:
| Q |
40 |
ggacttaaatagaagatatatatttacttt-gtcaaacagtctagtgactagaagttgactattttaaggtgtaatatatgaaaactaggctcataaatt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
10050155 |
ggacttaaatagaagatatatatttacttttgtcaaacagttaagtggctagaagttgactattttaaggtgtaatatatgagaattaggctcataaatt |
10050254 |
T |
|
| Q |
139 |
tgtgaaattgtgttattctccatcacaaattttaaaatggtatcaagagtttattcaagatttgtcgggtcatcttctatcaaatttctactatcaagtc |
238 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10050255 |
tgtgaa-ttgtgttattctccatcacaaattttaaaatggtatcaagagtttattcaagatttgtcgggtcatcttctatcaaatttctgctatcaagtc |
10050353 |
T |
|
| Q |
239 |
agttaagtcacgctccagatgtccagtcctaattatgagagagtgtagtaagagtctcatattaagcatgaacaaatgcttataagtgggaattatcttc |
338 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10050354 |
agttaagtcacgctccagatgttcggtcctaattatgagagaatgtggtatgagtctcatattaagcatgaacaaatgcttataagtgggaacaatcttc |
10050453 |
T |
|
| Q |
339 |
at |
340 |
Q |
| |
|
|| |
|
|
| T |
10050454 |
at |
10050455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University