View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17951_low_4 (Length: 201)
Name: NF17951_low_4
Description: NF17951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17951_low_4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 44523856 - 44523930
Alignment:
| Q |
127 |
taatgaaaataaaaataaggtatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactg |
201 |
Q |
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| T |
44523856 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactg |
44523930 |
T |
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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 41322266 - 41322190
Alignment:
| Q |
125 |
attaatgaaaataaaaataaggtatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactg |
201 |
Q |
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| T |
41322266 |
attaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactg |
41322190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 37726238 - 37726164
Alignment:
| Q |
127 |
taatgaaaataaaaataaggtatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactg |
201 |
Q |
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| T |
37726238 |
taatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactg |
37726164 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 12503203 - 12503276
Alignment:
| Q |
127 |
taatgaaaataaaaataaggtatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccact |
200 |
Q |
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| T |
12503203 |
taatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccact |
12503276 |
T |
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