View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_high_1 (Length: 746)
Name: NF17952_high_1
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 5e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 491 - 734
Target Start/End: Complemental strand, 33963984 - 33963745
Alignment:
| Q |
491 |
acgtgtgactccggaacacgataaccttcttacaagtga---attccaagctaatgaatttcgacaggccttgtttagcatgcatgcagatacagcttca |
587 |
Q |
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| T |
33963984 |
acgtgcgactccggaacacaataaccttcttacaagtgatcaattccaagctaatgaatttcgacaggccttgtttagcat--------atacagcttca |
33963893 |
T |
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| Q |
588 |
ggctccgacaaattaattggatcaagcaacactgcattt-gaatgaaactaacatagtgttgatactgaaggttagaatctgacatctatgaaggattta |
686 |
Q |
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| T |
33963892 |
ggccccgacaaattaattggatcaagcaacactgcattttgaatgaaaccaacatagttttgatactgaaggttagaatctgacatctatgaaggattta |
33963793 |
T |
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| Q |
687 |
agaccaatatccctgtgcaaaaacatgtccataccctttccttatttt |
734 |
Q |
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| T |
33963792 |
agaccaatatccctgtgcaaaaacatgtccataccctttccttatttt |
33963745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 33964502 - 33964300
Alignment:
| Q |
15 |
agctatatagtaggatggtacaccttctatgctcttagaaattaaggaatgggnnnnnnnttgagcaaagatcttgtaacgcttacctaaattttttgaa |
114 |
Q |
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| T |
33964502 |
agctatatagtaggatggtacaccttctatgctcttagaaagtaaggaatgggaaaaaaattgagcaaagatcttgtaacgcttacctaaaatttttgaa |
33964403 |
T |
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| Q |
115 |
gcataattatcttgaagtccatttgtcgtagttagggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatgtt |
214 |
Q |
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| T |
33964402 |
gcataat-atcttgaagtccatttgtcgtagttagggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatggt |
33964304 |
T |
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| Q |
215 |
attc |
218 |
Q |
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| T |
33964303 |
attc |
33964300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 251 - 390
Target Start/End: Complemental strand, 33964124 - 33963985
Alignment:
| Q |
251 |
atattcaaatgaatcatgtgatacaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgaa |
350 |
Q |
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| T |
33964124 |
atattcaaatgaatcatgtgatgcaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgat |
33964025 |
T |
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| Q |
351 |
ttatttttcctgatttgattagcctctatgttcttatata |
390 |
Q |
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| T |
33964024 |
ttatttttccttatttgattagcctctatgttcttatata |
33963985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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