View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_high_11 (Length: 423)
Name: NF17952_high_11
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 10154222 - 10154619
Alignment:
| Q |
10 |
aaaaatatgtcgcaactcaatagtcatccattgaacacaattaaccacgattttgaatgttattaaccatgatattcaacccctattggttagttctagt |
109 |
Q |
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| T |
10154222 |
aaaaatatgccgcaactcaatagtcatccattgaacacaactaaccacgattttgaatgttattaaccatgatattcaacccctattggttagttctagt |
10154321 |
T |
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| Q |
110 |
ttttctttaactatattccccacctccttcttcaggctttatttaagtaagccatgccatgaatattcttgttaaactttttcattcannnnnnngtatg |
209 |
Q |
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| T |
10154322 |
ttttctttcactatattccccacctccttctgcaggctttatttaaataagccatgccatgaatattcttgttaaactttttcattcatttttttgtatg |
10154421 |
T |
|
| Q |
210 |
ttgaacaagtaaaatgtggggatttaatacatatagtattcaatatttttctgcatttactactacttactttatgacatgaatgtatcctaaaatgtgt |
309 |
Q |
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| T |
10154422 |
ttgaacaagtaaaatgtggggatttaatacatatagtattcaatatttttctgcatttactactacttactttatgacatgaatgtatcctaaaatgtgt |
10154521 |
T |
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| Q |
310 |
ggaattgctgatactttctcggtacaaaagattagacttccttctatttcaccacctaaacccctcatataaagtatgaaaaattcaacctagaagct |
407 |
Q |
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| T |
10154522 |
ggaattgctgatactttctcggtacaaaagattagacttccttctatttcaccacctaaacccctcatataaagtatgaaaaattcaacctagaagct |
10154619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 19808826 - 19808890
Alignment:
| Q |
17 |
tgtcgcaactcaatagtcatccattgaacacaattaaccacgattttgaatgttattaaccatga |
81 |
Q |
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| T |
19808826 |
tgtcacaactcagtaatcatccattgaacataattaaccacaactttgaatgtccttaaccatga |
19808890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 43432440 - 43432479
Alignment:
| Q |
39 |
attgaacacaattaaccacgattttgaatgttattaacca |
78 |
Q |
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| T |
43432440 |
attgaacacaattaactacgattttgaatgtcattaacca |
43432479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 44961949 - 44961916
Alignment:
| Q |
48 |
aattaaccacgattttgaatgttattaaccatga |
81 |
Q |
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| T |
44961949 |
aattaaccacgattttgaatgtcattaaccatga |
44961916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 21091339 - 21091295
Alignment:
| Q |
38 |
cattgaacacaattaaccacgattttgaatgttattaaccatgat |
82 |
Q |
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| T |
21091339 |
cattgaacgcaattaaccacaattttgaatgtcattaaccgtgat |
21091295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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