View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_high_17 (Length: 310)
Name: NF17952_high_17
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 36135089 - 36135384
Alignment:
| Q |
14 |
gagaagaaaaatagatagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatata------- |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36135089 |
gagaagaaaaatagatagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatatatagaatt |
36135188 |
T |
|
| Q |
107 |
-------gtccaaatacaaaagttgtttaagtaattgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcatt |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36135189 |
tatgagtgtccaaatataaaagttgtttaagtaattgataaaagtatttctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcatt |
36135288 |
T |
|
| Q |
200 |
aagtgtttggttgaaaaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36135289 |
aagtgtttggttgaaaaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttg-ttttttggaggaggtaatatattattat |
36135384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 41336660 - 41336789
Alignment:
| Q |
135 |
tgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaaaatttgtaattgacatatc |
234 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || || |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41336660 |
tgataaaaatatttttcaaccttcgcgtgttttttgtt---gttcaatgccaggtgaagatcattaagtgcttggttgaaaaatttgtaattgacatatc |
41336756 |
T |
|
| Q |
235 |
tttcaaccaattgagtggtttatgctcactttg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41336757 |
tttcaaccaattgagtggtttatgctcactttg |
41336789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 6463169 - 6463213
Alignment:
| Q |
34 |
tgatgtgataaatgtgatatgttaataatataatggaaacaaaga |
78 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| || ||||| |
|
|
| T |
6463169 |
tgatgtgataaatgtgatatgttaatgatgtaatgggaaaaaaga |
6463213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University