View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17952_high_20 (Length: 296)

Name: NF17952_high_20
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17952_high_20
NF17952_high_20
[»] chr2 (1 HSPs)
chr2 (5-296)||(36134818-36135109)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 36134818 - 36135109
Alignment:
Q  5 gagtgatatgaatattgttagcgatttctaatatcaatgcaaaattttccaattcaatatgtgtatttgtgtactttgtgattgagatgagccagtagca 104  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36134818 gagtgatctgaatattgttagcgatttctaatatcaatgtaaaattttcaaattcaatatgtgtatttgtgtactttgtgattgagatgagccagtagca 36134917  T
Q  105 agaatgaagaatgtttgatgatgtagcttgttttgaacaatggaatgtgttaatccattatatattcacnnnnnnngggctatattgtcaaaaatgttct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  36134918 agaatgaagaatgtttgatgatgtagcttgttttgaacaatggaatgtgttaatccattatatattcactttttttgggctatattgtcaaaaatgttct 36135017  T
Q  205 cttgctcgaacaaatttctagatgaactgcttagaaataccttactctaatgggtgtttcaatatttaagagagaagaaaaatagatagagt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36135018 cttgctcgaacaaatttctagatgaactgcttagaaataccttactctaatgggtgtttcaatatttaagagagaagaaaaatagatagagt 36135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University