View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_high_30 (Length: 242)
Name: NF17952_high_30
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_30 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 14175607 - 14175406
Alignment:
| Q |
41 |
tcaacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaata |
140 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
14175607 |
tcaacttcaaacggactttcagagttcatcgctaatccaaaacacatgaaatttatatccaaatcgaagtaaattaagcgtagaatctaaatatcaaata |
14175508 |
T |
|
| Q |
141 |
atcacttaatttcgatttacacagtaaaagacatgatccaaataacagtacctgaccaaacagcttagtaattcatcttctagcttataccactctagtc |
240 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175507 |
atcacttaattttgatttacacagtaaaagacatgacccaaataacagtacctgaccaaacagcttagtaattcatcttctagcttataccactctagtc |
14175408 |
T |
|
| Q |
241 |
ct |
242 |
Q |
| |
|
|| |
|
|
| T |
14175407 |
ct |
14175406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 14175719 - 14175678
Alignment:
| Q |
5 |
taccaagtatataggttcagttctggagccattccatcaact |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175719 |
taccaagtatataggttcagttctggagccattccatcaact |
14175678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 11825559 - 11825668
Alignment:
| Q |
42 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
141 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||| ||| || |||| ||| |||||| | ||| |||| ||||||| |||||||| |||| | ||||| |
|
|
| T |
11825559 |
caacttcaaaagcactttccgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaattaagcgtagaatccaaatatccaataa |
11825658 |
T |
|
| Q |
142 |
tcacttaatt |
151 |
Q |
| |
|
|||||||||| |
|
|
| T |
11825659 |
tcacttaatt |
11825668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 38413 - 38517
Alignment:
| Q |
42 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |||||| |||||||||||| |||||||| |||| || ||||| |
|
|
| T |
38413 |
caacttcaaacgcactttccgagttcatcactaatcaaaatcacataaaatttatgtccaaactgaagtaaattaaacgtagaatccaaatattcaataa |
38512 |
T |
|
| Q |
142 |
tcact |
146 |
Q |
| |
|
||||| |
|
|
| T |
38513 |
tcact |
38517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 14801314 - 14801210
Alignment:
| Q |
42 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |||||| |||||||||||| |||||||| |||| || ||||| |
|
|
| T |
14801314 |
caacttcaaacgcactttccgagttcatcactaatcaaaatcacataaaatttatgtccaaactgaagtaaattaaacgtagaatccaaatattcaataa |
14801215 |
T |
|
| Q |
142 |
tcact |
146 |
Q |
| |
|
||||| |
|
|
| T |
14801214 |
tcact |
14801210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 69126 - 69070
Alignment:
| Q |
72 |
ctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatct |
128 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
69126 |
ctaatccaaaacatacaaaatttatatccaaactgaagtgaattaagtgtagaatct |
69070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University