View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_high_5 (Length: 572)
Name: NF17952_high_5
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 55 - 487
Target Start/End: Complemental strand, 9186292 - 9185882
Alignment:
| Q |
55 |
acattaagaatgaacagttcttgtttttgtatcataaataattagctagaacaggctttgttttgtgagacagttctgtctcttgttgaatctgttgatg |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9186292 |
acattaagaatgaacagttcttgtttttgtatcataaataattagctagaacaggctttgt-----gagacagttctgtctcttgttgaatctgttgatg |
9186198 |
T |
|
| Q |
155 |
cataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttcgagttttcatgtatcacttaata |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9186197 |
cataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttagagttttcatgtatcacttaata |
9186098 |
T |
|
| Q |
255 |
aacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaactttacaagtgaacgatgaaattctttaaaattcttt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9186097 |
aacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaacttgtaaagtgaacgatgaaattctttaaaattcttt |
9185998 |
T |
|
| Q |
355 |
ttacactagaaatcttttcggtatgagatttagaatatgacgacttctggtggcacttggatagaatttaagaaaggggcaaagtcaattttttatgtgt |
454 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9185997 |
ttacattagaaatcttttcggtatgagatttagaa-----------------gcacttggatagaatttaagaaaggggcaaagtcaattttttatgtgt |
9185915 |
T |
|
| Q |
455 |
gctatactatgtgtttttagtccacaccaccat |
487 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
9185914 |
gctatactatgtgtttttaatccacaccaccat |
9185882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 9185645 - 9185591
Alignment:
| Q |
508 |
ggttagatgttattttatgtaagccagtatcaataatacttgcttgctgcctttg |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9185645 |
ggttagatgttattttatgtaagccagtatcaatattacttgcttgctgcctttg |
9185591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University