View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_high_9 (Length: 489)
Name: NF17952_high_9
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 305
Target Start/End: Original strand, 42018297 - 42018577
Alignment:
| Q |
25 |
acttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactttgtcagtgt |
124 |
Q |
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| T |
42018297 |
acttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgctacaaacaattgacataggaggaatcaactttgtcagtgt |
42018396 |
T |
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| Q |
125 |
tattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018397 |
tattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttatt |
42018496 |
T |
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| Q |
225 |
ggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
305 |
Q |
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| T |
42018497 |
ggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
42018577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 305 - 463
Target Start/End: Original strand, 42018701 - 42018859
Alignment:
| Q |
305 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatattcaaaaagtccctttcagtgtttctaaaagaatctctagtgt |
404 |
Q |
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| T |
42018701 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatattcaaaaagtcccttgcagtgtttctcaaagaatctctagtgt |
42018800 |
T |
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| Q |
405 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaacaacacactc |
463 |
Q |
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| T |
42018801 |
catattgccaaccaccaccattcctatgtgctccagcagcagcttcaaactccacactc |
42018859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 25 - 305
Target Start/End: Original strand, 1251517 - 1251797
Alignment:
| Q |
25 |
acttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactttgtcagtgt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1251517 |
acttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgctgcaaacaattgacataggaggaatcaactttgtcagtgt |
1251616 |
T |
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| Q |
125 |
tattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttatt |
224 |
Q |
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| T |
1251617 |
tattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttatt |
1251716 |
T |
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| Q |
225 |
ggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
305 |
Q |
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| T |
1251717 |
ggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
1251797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 305 - 476
Target Start/End: Original strand, 1251924 - 1252095
Alignment:
| Q |
305 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatattcaaaaagtccctttcagtgtttctaaaagaatctctagtgt |
404 |
Q |
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| T |
1251924 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatattcaaaaagtcccttgcagtgtttctaaaagaatctctagtgt |
1252023 |
T |
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| Q |
405 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaacaacacactctcactgactgcct |
476 |
Q |
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| T |
1252024 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaactccacactctcgctggctgcct |
1252095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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