View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_low_1 (Length: 893)
Name: NF17952_low_1
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 39304491 - 39304771
Alignment:
| Q |
1 |
tcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304491 |
tcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcg |
39304590 |
T |
|
| Q |
101 |
gagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaacgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39304591 |
gagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatattatttgggctattacaacgt |
39304690 |
T |
|
| Q |
201 |
taggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304691 |
taggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
39304771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 344 - 547
Target Start/End: Original strand, 39304828 - 39305031
Alignment:
| Q |
344 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaacctccttatatgactactgatcaaccatttccacttc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304828 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaaactccttatatgactactgatcaaccatttccacttc |
39304927 |
T |
|
| Q |
444 |
ctttctctccaaattcgattcaaaaacaattacgaccgcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagctaattttatgt |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304928 |
ctttctctccaaattcgattcaaaaacaattacgacagcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagctaattttatgt |
39305027 |
T |
|
| Q |
544 |
ttgg |
547 |
Q |
| |
|
|||| |
|
|
| T |
39305028 |
ttgg |
39305031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 638 - 876
Target Start/End: Original strand, 39305122 - 39305366
Alignment:
| Q |
638 |
cacatacaattaatgtaatgnnnnnnngccacttttcaaaataaaatgatcttgaagcttttgtttgtcattg----tcgtgtaatattgacaaggaaaa |
733 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39305122 |
cacatacaattaatgtaatgtttttt-gccacttttcaaaataaaatgatcttgaagcttttgtttgtcattgattgtcgtgtaatattgacaaggaaaa |
39305220 |
T |
|
| Q |
734 |
tgataaattgcacaaaagttgcactga---gtgaatatgcacaacaagtccaaattcaatcatatgccaatattcaaacagaatcactaaacgtacttat |
830 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39305221 |
tgataaattgcacaaaagttgcactaattagtgaatatgcacaacaagtctaaattcaatcatatgccaatattcaaacagaatcactcaacgtacttat |
39305320 |
T |
|
| Q |
831 |
gatggccaatgactcatgagaggattctggtttgttaattaagtta |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39305321 |
gatggccaatgactcatgagaggattctggtttgttaattaagtta |
39305366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 38281618 - 38281774
Alignment:
| Q |
42 |
ttcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatg |
141 |
Q |
| |
|
|||| ||||||| ||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||| | || || ||||| || ||||| || |
|
|
| T |
38281618 |
ttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtg |
38281717 |
T |
|
| Q |
142 |
tcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaac |
198 |
Q |
| |
|
||| ||||||||||| || ||||| |||||||||||| || |||||||||| ||||| |
|
|
| T |
38281718 |
tcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
38281774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 41866626 - 41866750
Alignment:
| Q |
89 |
gaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttggg |
188 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||| ||||| || ||||| ||||| ||||| ||| ||||||| ||||| || || ||| | |||||| |
|
|
| T |
41866626 |
gaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttggg |
41866725 |
T |
|
| Q |
189 |
ctattacaacgttaggctttgaaga |
213 |
Q |
| |
|
| || || |||||||| |||||||| |
|
|
| T |
41866726 |
cgatgactacgttaggatttgaaga |
41866750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University