View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_10 (Length: 495)
Name: NF17952_low_10
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 59 - 475
Target Start/End: Original strand, 3598099 - 3598515
Alignment:
| Q |
59 |
aagcatgaaatatagaggaaataaagaaaggaatataagaaataacaaacaaagtagtagaaacgtgaatctcaatttcactactaaatatagtcacatc |
158 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
|
| Q |
159 |
tcaaatcgagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagaataaagattt |
258 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
3598298 |
T |
|
| Q |
259 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtg |
358 |
Q |
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| T |
3598299 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttacattttcacggcatagtcatccgataatgtg |
3598398 |
T |
|
| Q |
359 |
caatgaattctattcccccctacgaagtgtaaattaatcaaataaaaagcacgtaattatcagcaattattctgcattaagtaatgttaatagattaaga |
458 |
Q |
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| T |
3598399 |
caatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaatagattaaga |
3598498 |
T |
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| Q |
459 |
cttactctaaatcttct |
475 |
Q |
| |
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||||||||||||||||| |
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| T |
3598499 |
cttactctaaatcttct |
3598515 |
T |
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Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 475
Target Start/End: Complemental strand, 4356973 - 4356506
Alignment:
| Q |
12 |
caaaggctaatacattattcagcaaaattatattgacacataatcataagcatgaaatatagaggaaataaagaaaggaatataagaaataacaaacaaa |
111 |
Q |
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||||||||||||||||||||| ||||| |||||| | ||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |
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| T |
4356973 |
caaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaa |
4356876 |
T |
|
| Q |
112 |
gtagtagaaacgtgaatctcaatttcactactaaatatagtcac--atctcaaatcgagttaatgatacttcagaggttgaaatcaacatatgatgaatt |
209 |
Q |
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|||||||||||||||||||||||||| ||| ||| |||||||| ||||||| || |||| |||||||||| ||||||| ||||| ||||||||||| |
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| T |
4356875 |
gtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaata |
4356776 |
T |
|
| Q |
210 |
ttatataaaaacactatagttgacataaaagttttaagaataaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgat-aatcat |
308 |
Q |
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||||| |||||||||||||||||||||||| ||| || | |||||||| ||||||||||||||||||||| || |||| |||||||||| ||| |||||| |
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| T |
4356775 |
ttatagaaaaacactatagttgacataaaaatttaaatactaaagattaaggaactttacctgaagttttgcagaacagtcacaggaagcgatgaatcat |
4356676 |
T |
|
| Q |
309 |
gattatccaaaaacttttgcattttcacggcatagtcatccgataatgtgcaatgaattctattcccccctacgaagtgtaaattaatcaaataaaa--- |
405 |
Q |
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|||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |
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| T |
4356675 |
gattatcctaaaattgttgcattctcacggcatagtcatccgataatgtgcaatgaattctatt-ccccctacgaagtgcaaattaatcaaattaaaagt |
4356577 |
T |
|
| Q |
406 |
-agcacgtaattatcagcaattattctgcattaagtaatgttaatagattaagacttactctaaatcttct |
475 |
Q |
| |
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||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4356576 |
tagcacataattatcaacaattgttctgcattgagtaatgttaatagattaagacttgctctaaatcttct |
4356506 |
T |
|
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