View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_14 (Length: 400)
Name: NF17952_low_14
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 41343844 - 41343463
Alignment:
| Q |
8 |
ataatactggaggtaatactaaaaatgtataactttgtagtattgagttcttccatgactaatatacaattgatcaaatttgtataattagttctgatga |
107 |
Q |
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| T |
41343844 |
ataagactggaggtaatactaaaaatgtataactttgtagtattgagttcttccatgaataatatacaattgatcaaatttgtataattagttctgatga |
41343745 |
T |
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| Q |
108 |
tccaaaccttcacggttttgttttcaggaaattactgcacaaaggtgagtggaatcactatccgagatccaattaaacatgaaacatatgatttttctac |
207 |
Q |
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| T |
41343744 |
tccaaaccttcacggttttgttttcaggaaattactgcacaaaggtgagtggaatcactatccgagatccaattaaacatgaaacatatgatttttctac |
41343645 |
T |
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| Q |
208 |
ttgtcactttcaaggtaaaatcaaga---agtgtatgttttccatacatacatttgtataggtattatttttacaattctcacgtgatannnnnnncttt |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41343644 |
ttgtcactttcaaggtaaaatcaagaagtagtgtatgttttccatacatacatttgtataggtattatttttacaattctcacgtgatatttttttcttt |
41343545 |
T |
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| Q |
305 |
cttctgtagattataaagaagaagctaacaaagctacgtgagagtatgggttttcaaacagcacataacactaagttgatat |
386 |
Q |
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| T |
41343544 |
cttctttagattataaagaagaagctaacaaagctacgtgagagtatgggttttcaaacagcacataacactaagctgatat |
41343463 |
T |
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