View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17952_low_15 (Length: 387)
Name: NF17952_low_15
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 35135849 - 35135497
Alignment:
| Q |
18 |
atagtactattggcaatggcattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattcaaa |
117 |
Q |
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| T |
35135849 |
atagtactattggcaatgggattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattcaaa |
35135750 |
T |
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| Q |
118 |
gcaaagcacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagggga |
217 |
Q |
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| T |
35135749 |
gcaaagtacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagggga |
35135650 |
T |
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| Q |
218 |
aggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgtata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35135649 |
aggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgtata |
35135550 |
T |
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| Q |
318 |
ggtcatcttttgggactatagaaggaagaagatcagtttgtagtgagataagt |
370 |
Q |
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| T |
35135549 |
ggtcatcttttgggactatagaaggaagaagatcagtttgtagtgagataagt |
35135497 |
T |
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