View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17952_low_16 (Length: 346)
Name: NF17952_low_16
Description: NF17952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17952_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 5481693 - 5482022
Alignment:
| Q |
1 |
tttgcattatcttgatatctctaactcattttcgtcactttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481693 |
tttgcattatcttgatatctctaactcattttcgtcactttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggat |
5481792 |
T |
|
| Q |
101 |
tttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
5481793 |
tttgccaaatttatcaactcgccccacgagttgtttcgatctgtgaataagatgtcttctatgttagagttgcacttgtcc--------tcttgttgctc |
5481884 |
T |
|
| Q |
201 |
tcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5481885 |
tcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaataccttcttggatattcaacat |
5481984 |
T |
|
| Q |
301 |
gagcggtctcatagaactagatcttcgtaattcatctc |
338 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
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|
| T |
5481985 |
gagcagtctcatagaactagatctttgtaattcatctc |
5482022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 5489749 - 5490045
Alignment:
| Q |
8 |
tatcttgatatctctaactcattttcgtcactttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggattttgcca |
107 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||||||| |||||||| |||| |||||| | |
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| T |
5489749 |
tatcttgatatctctagcccatattcgtcactttgggctagagacttaagctggctatctgctctgtcttcgcttcgatatcttgacatgaattttgtaa |
5489848 |
T |
|
| Q |
108 |
aatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttc |
207 |
Q |
| |
|
| ||||||||||||| || |||||||| | | ||||||||||||||| | ||||||||| ||||| ||| | ||||||||||||| ||||||||| | |
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|
| T |
5489849 |
acattaccaactcgccacatgagttgttccaagttgtgaataagatgtcatatttgttagaattgcatttggcttcttgcaatcttggcgctctccctcc |
5489948 |
T |
|
| Q |
208 |
atcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgagc |
304 |
Q |
| |
|
||| ||||| ||||||||| |||||||||||||| ||||||||||| ||||||| |||| |||||||||| ||||||||||| |||||||||||| |
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|
| T |
5489949 |
atcgtcaccatttttaaattctacatcactttctgtgcttgatctctctggaaatcattttaattcctcaataccttcttggatgttcaacatgagc |
5490045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 5476625 - 5476922
Alignment:
| Q |
9 |
atcttgatatctctaactcattttcgtcactttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggattttgccaa |
108 |
Q |
| |
|
||||||||||||||| ||| ||| ||| ||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||| || ||| |
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|
| T |
5476625 |
atcttgatatctctagttcagattcttcagtttgggtcagagacttaagctggctttctgctctgtcttcacttcaatatcttggcatggattatgtcaa |
5476724 |
T |
|
| Q |
109 |
atttaccaactcgccccacga---gttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctccct |
205 |
Q |
| |
|
||||||||||| ||| | | |||||||||| ||||||| |||||||||||| ||||||||||||| ||| | |||||| || | |||||||| |
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| T |
5476725 |
tgttaccaactcgtccctctagttgttgtttcgagctgtgaaaaagatgtcttctctgttagagttgcatttggcttcttgcggaatttcttctctccct |
5476824 |
T |
|
| Q |
206 |
tcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgag |
303 |
Q |
| |
|
|| |||| || ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| | ||||||||||| |
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|
| T |
5476825 |
ccaacttcgccatttttaaatattacaccactttctgtgcttgatctctctggaaatcctttaaatacctcaatgccttcttggctgttcaacatgag |
5476922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 5495525 - 5495812
Alignment:
| Q |
2 |
ttgcattatcttgatatctctaactcattttcgtcactttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggatt |
101 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| || ||||||||||||||||| |||||||||||| || ||||||| ||||||| |||| ||||| ||| |
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|
| T |
5495525 |
ttgcattatcttgatatctctaccccattttcatccctttgggtcagagactttagttggctctctgctttgtcttcacttcaatttcttagcatgaatt |
5495624 |
T |
|
| Q |
102 |
ttgccaaatttaccaactcgccccacgagttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctct |
201 |
Q |
| |
|
|| || |||||| ||||||||| |||| ||||| |||| |||||||||| | ||| | ||||||||||| || | ||||||||||| | ||| |
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|
| T |
5495625 |
atgtaaatattaccacctcgccccatgagtggtttcaaactatgaataagataccatctctattagagttgcatttaatgtattgcaatcttgcttttct |
5495724 |
T |
|
| Q |
202 |
cccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttgg |
289 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||| || || ||||||||| |
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|
| T |
5495725 |
cccaccatcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcatctataccttcttgg |
5495812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 5484602 - 5484783
Alignment:
| Q |
46 |
cagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtg |
145 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| ||| | |||||||||||||| |||||||||||| ||||| |
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|
| T |
5484602 |
cagagacttaagttggctctctgctctatcttcgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtg |
5484701 |
T |
|
| Q |
146 |
aataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaata |
227 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||||||||||||||| | |||| || | |||||||| |||||||||| |
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|
| T |
5484702 |
aataagatgtcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
5484783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 5500605 - 5500864
Alignment:
| Q |
47 |
agagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgtttcgaactgtga |
146 |
Q |
| |
|
||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||| ||| |||||||||||| |||||| |
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|
| T |
5500605 |
agagacttaagctggctatctgctctgacttcgcttcaatatcttggcatggattttatcaacatcaccaactcgtcccgtgagttgtttcgagctgtga |
5500704 |
T |
|
| Q |
147 |
ataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtcct |
246 |
Q |
| |
|
|||||||||| ||| | ||||||||||| ||||||| ||||| ||||| | | |||||| || ||||||| ||| ||||||| ||||| ||||| || |
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|
| T |
5500705 |
ataagatgtcatctctattagagttgcatttgtccttttgcagtcttgcttcactccctccagcttcaccatttctaaatattacatctctttccaggct |
5500804 |
T |
|
| Q |
247 |
tgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgagcgg |
306 |
Q |
| |
|
| ||||| | ||||||| |||| ||||| | || ||||||||| | |||||||||||||| |
|
|
| T |
5500805 |
ttatctcactggaaatctttttaattccactataccttcttggctgttcaacatgagcgg |
5500864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 5467021 - 5467239
Alignment:
| Q |
37 |
actttgggtcagagacttaagttggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttaccaactcgccccacgagttgttt |
136 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||| |||||||||||||||||||| |||||| |||| || | || |||| |||| ||||||||| |
|
|
| T |
5467021 |
actttgggtcagagacataagctggctctataccttgtcttcgcttcaatatcttaacatggactttgttaacatcacagactcaccccgtgagttgttt |
5467120 |
T |
|
| Q |
137 |
cgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcac |
236 |
Q |
| |
|
||| |||| ||||||||| | ||| ||||||||||||| ||||||| ||||||||||| ||| |||||| |||||||||| ||||||||||| |||||| |
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|
| T |
5467121 |
cgagctgttaataagatgccatctctgttagagttgcatttgtccttttgcaatcttgctgcactccctccatcttcaccctttttaaatatttcatcac |
5467220 |
T |
|
| Q |
237 |
tttctgtccttgatctctc |
255 |
Q |
| |
|
||| ||| ||||| ||||| |
|
|
| T |
5467221 |
tttatgtgcttgacctctc |
5467239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 5485000 - 5485084
Alignment:
| Q |
218 |
tttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgag |
303 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||| |||||||||||| |||||||| | ||||||||||| ||||||||||| |
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|
| T |
5485000 |
tttttaaatattacatcactttatgtg-ttgatctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgag |
5485084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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